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Chlorine in PDB 6p8c: 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus

Enzymatic activity of 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus

All present enzymatic activity of 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus:
1.1.1.302;

Protein crystallography data

The structure of 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus, PDB code: 6p8c was solved by V.Carbone, L.R.Schofield, I.Hannus, A.J.Sutherland-Smith, R.S.Ronimus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.98 / 2.07
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.921, 89.597, 107.013, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 22.2

Other elements in 6p8c:

The structure of 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus (pdb code 6p8c). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus, PDB code: 6p8c:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6p8c

Go back to Chlorine Binding Sites List in 6p8c
Chlorine binding site 1 out of 2 in the 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:50.4
occ:1.00
 O A:HOH489 3.0 50.1 1.0
N A:LEU59 3.1 30.3 1.0
NH1 A:ARG39 3.4 27.8 1.0
NE2 A:HIS62 3.5 38.4 1.0
O A:HOH445 3.5 50.5 1.0
N A:ARG58 3.7 31.2 1.0
CA A:LEU59 3.8 34.0 1.0
NH2 A:ARG39 3.9 28.3 1.0
CZ A:ARG39 4.1 32.0 1.0
C A:ARG58 4.1 29.9 1.0
CB A:PRO57 4.1 30.2 1.0
CA A:ARG58 4.2 31.5 1.0
CB A:ARG58 4.2 32.0 1.0
N A:THR60 4.2 30.8 1.0
CE1 A:HIS62 4.3 35.8 1.0
CD2 A:HIS62 4.4 36.9 1.0
C A:PRO57 4.5 32.6 1.0
O A:HOH522 4.5 41.9 0.5
C A:LEU59 4.5 31.2 1.0
CA A:PRO57 4.5 31.5 1.0
CD2 A:LEU59 4.6 30.6 1.0
O A:THR60 4.7 29.0 1.0
CE1 A:HIS36 4.8 31.7 1.0
NE2 A:HIS36 4.8 32.8 1.0
CB A:LEU59 5.0 30.2 1.0

Chlorine binding site 2 out of 2 in 6p8c

Go back to Chlorine Binding Sites List in 6p8c
Chlorine binding site 2 out of 2 in the 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:57.1
occ:1.00
 O B:HOH474 2.9 43.8 1.0
N B:LEU59 3.1 34.2 1.0
NH1 B:ARG39 3.2 30.9 1.0
O B:HOH464 3.5 67.8 1.0
N B:ARG58 3.6 34.7 1.0
CA B:LEU59 3.7 33.8 1.0
NE2 B:HIS62 3.8 41.5 1.0
NH2 B:ARG39 3.8 28.1 1.0
CZ B:ARG39 4.0 33.7 1.0
C B:ARG58 4.1 32.1 1.0
CB B:ARG58 4.2 34.8 1.0
CA B:ARG58 4.2 34.5 1.0
CB B:PRO57 4.2 29.9 1.0
N B:THR60 4.3 34.4 1.0
C B:PRO57 4.5 35.9 1.0
C B:LEU59 4.6 37.3 1.0
CD2 B:LEU59 4.6 36.0 1.0
CA B:PRO57 4.6 36.6 1.0
CD2 B:HIS62 4.6 40.1 1.0
CE1 B:HIS62 4.7 41.4 1.0
NE2 B:HIS36 4.7 33.7 1.0
O B:THR60 4.7 31.8 1.0
CB B:LEU59 4.9 34.0 1.0
CE1 B:HIS36 4.9 38.5 1.0

Reference:

V.Carbone, L.R.Schofield, I.Hannus, A.J.Sutherland-Smith, R.S.Ronimus. The Crystal Structure of 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus To Be Published.
Page generated: Mon Jul 29 13:11:40 2024

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