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Chlorine in PDB 6r88: Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with Glycine

Protein crystallography data

The structure of Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with Glycine, PDB code: 6r88 was solved by A.Alfieri, R.Pederzoli, A.Costa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.27 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 96.972, 98.239, 114.256, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 18.1

Other elements in 6r88:

The structure of Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with Glycine also contains other interesting chemical elements:

Sodium (Na) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with Glycine (pdb code 6r88). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with Glycine, PDB code: 6r88:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6r88

Go back to Chlorine Binding Sites List in 6r88
Chlorine binding site 1 out of 2 in the Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with Glycine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with Glycine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:50.5
occ:1.00
N B:ARG22 3.1 20.1 1.0
O B:HOH444 3.1 34.6 1.0
CA B:ILE21 3.6 18.4 1.0
C B:ILE21 3.8 19.6 1.0
NZ B:LYS29 3.9 34.1 1.0
CB B:ARG22 3.9 33.2 1.0
CE B:LYS29 4.0 29.8 1.0
O B:HOH509 4.0 42.1 1.0
CA B:ARG22 4.1 23.4 1.0
CG2 B:ILE21 4.1 21.9 1.0
O B:GLN20 4.2 19.1 1.0
CB B:ILE21 4.3 19.1 1.0
NH2 B:ARG22 4.6 68.1 1.0
O B:HOH602 4.6 43.6 1.0
N B:ILE21 4.7 15.6 1.0
CG1 B:ILE21 4.7 21.6 1.0
NE B:ARG22 4.7 61.3 1.0
C B:GLN20 4.8 17.2 1.0
O B:HOH621 4.9 49.3 1.0
CZ B:ARG22 4.9 70.7 1.0
CD B:LYS29 4.9 22.8 1.0
O B:ARG22 5.0 20.1 1.0

Chlorine binding site 2 out of 2 in 6r88

Go back to Chlorine Binding Sites List in 6r88
Chlorine binding site 2 out of 2 in the Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with Glycine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with Glycine within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl302

b:55.7
occ:1.00
N D:ALA46 3.3 28.9 1.0
CA D:TYR45 3.7 27.8 1.0
O D:HOH407 3.8 43.8 1.0
CB D:ALA46 3.9 30.9 1.0
CB D:TYR45 4.0 29.1 1.0
C D:TYR45 4.0 30.7 1.0
CA D:ALA46 4.2 28.4 1.0
O D:PRO44 4.9 39.6 1.0
O D:ALA46 5.0 25.6 1.0

Reference:

A.Alfieri, F.G.Doccula, R.Pederzoli, M.Grenzi, M.C.Bonza, L.Luoni, A.Candeo, N.Romano Armada, A.Barbiroli, G.Valentini, T.R.Schneider, A.Bassi, M.Bolognesi, M.Nardini, A.Costa. The Structural Bases For Agonist Diversity in An Arabidopsis Thaliana Glutamate Receptor-Like Channel Proc.Natl.Acad.Sci.Usa 2019.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.1905142117
Page generated: Sat Jul 12 19:17:30 2025

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