Chlorine in PDB 6rbm: Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium

The structure of Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium, PDB code: 6rbm was solved by W.Hinrichs, G.J.Palm, L.Berndt, B.Girbardt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.90 / 2.05
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	67.670, 67.670, 178.740, 90.00, 90.00, 90.00
R / Rfree (%)	21.1 / 26.3

The structure of Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Chlorine atom in the Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium (pdb code 6rbm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium, PDB code: 6rbm:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in the Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:70.0 occ:1.00 O A:HOH412 3.0 57.9 1.0 N A:GLY102 3.4 58.2 1.0 CD2 A:LEU101 3.8 70.2 1.0 CA A:LEU101 3.9 58.8 1.0 O A:HOH432 4.1 58.4 1.0 CD1 A:LEU142 4.1 53.0 1.0 C A:LEU101 4.2 56.8 1.0 CA A:GLY102 4.3 56.7 1.0 O A:THR103 4.4 54.9 1.0 O A:HIS100 4.5 48.5 1.0 CD2 A:HIS100 4.5 45.6 1.0 N A:LEU101 4.7 55.5 1.0 MG A:MG302 4.7 52.3 1.0 N A:THR103 4.7 55.1 1.0 C A:HIS100 4.9 50.0 1.0 O4 A:MIY301 4.9 54.6 1.0 CB A:LEU101 5.0 63.1 1.0 CG A:LEU101 5.0 70.3 1.0 C A:GLY102 5.0 59.4 1.0

Chlorine binding site 2 out of 6 in the Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl304 b:51.1 occ:1.00 N A:LEU4 3.1 48.6 1.0 NH2 A:ARG3 3.4 59.2 1.0 CB A:LEU4 3.8 46.2 1.0 CA A:LEU4 3.9 51.1 1.0 CD A:ARG3 4.0 58.8 1.0 C A:ARG3 4.1 51.5 1.0 C A:LEU4 4.1 51.0 1.0 CA A:ARG3 4.1 55.0 1.0 CG A:LEU4 4.3 46.9 1.0 N A:ASN5 4.3 50.5 1.0 CG A:ARG3 4.4 56.8 1.0 CZ A:ARG3 4.5 59.8 1.0 NE A:ARG3 4.7 59.5 1.0 O A:LEU4 4.7 57.3 1.0 CB A:ARG3 4.8 56.7 1.0 O A:HOH455 4.8 44.1 1.0

Chlorine binding site 3 out of 6 in the Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl305 b:73.7 occ:1.00 N A:GLU7 3.5 48.4 1.0 ND2 A:ASN5 3.6 56.1 1.0 N A:ARG6 3.8 46.8 1.0 CB A:ARG6 3.8 51.2 1.0 CB A:ASN5 3.8 50.7 1.0 CG A:ASN5 4.0 55.0 1.0 CB A:GLU7 4.0 55.5 1.0 CA A:ARG6 4.2 48.6 1.0 CA A:GLU7 4.4 50.7 1.0 C A:ARG6 4.4 46.0 1.0 C A:ASN5 4.4 48.5 1.0 CA A:ASN5 4.7 49.4 1.0 OD1 A:ASN5 4.9 59.2 1.0 CG A:ARG6 4.9 53.6 1.0

Chlorine binding site 4 out of 6 in the Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl306 b:83.0 occ:1.00 O A:HOH459 3.0 69.9 1.0 O A:HOH429 3.2 49.6 1.0 OG1 A:THR27 3.3 48.7 1.0 O A:HOH403 3.3 66.1 1.0 CG2 A:THR27 3.6 51.6 1.0 N A:THR27 3.6 50.1 1.0 CB A:LYS48 3.8 53.6 1.0 CB A:THR27 3.9 50.5 1.0 CA A:THR26 4.1 54.0 1.0 CB A:THR26 4.2 53.3 1.0 CG A:LYS48 4.4 55.7 1.0 C A:THR26 4.4 49.0 1.0 CA A:THR27 4.4 51.0 1.0 N A:LYS48 4.5 49.2 1.0 CA A:LYS48 4.6 49.5 1.0 CG2 A:THR26 4.7 54.9 1.0 CD A:LYS48 4.7 55.0 1.0

Chlorine binding site 5 out of 6 in the Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl307 b:66.1 occ:1.00 CA A:SER2 3.5 64.0 1.0 N A:ARG3 3.5 55.6 1.0 C A:SER2 3.9 60.8 1.0 CB A:SER2 3.9 64.6 1.0 CB A:ARG3 4.2 56.7 1.0 CA A:ARG3 4.4 55.0 1.0 N A:SER2 4.6 63.5 1.0 O A:SER2 4.9 62.3 1.0

Chlorine binding site 6 out of 6 in the Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl308 b:80.0 occ:1.00 CD A:ARG28 3.4 72.2 1.0 CE A:LYS29 3.5 71.6 1.0 OG1 A:THR26 3.6 55.0 1.0 CG A:LYS29 3.7 60.4 1.0 CD A:LYS29 3.8 65.1 1.0 CB A:ARG28 3.8 65.1 1.0 CG A:ARG28 4.1 68.9 1.0 NZ A:LYS29 4.2 73.2 1.0 NH1 A:ARG28 4.2 80.0 1.0 NE A:ARG28 4.6 79.6 1.0 CB A:THR26 4.6 53.3 1.0 CG2 A:THR26 4.6 54.9 1.0 N A:LYS29 4.7 55.6 1.0 CB A:LYS29 4.9 57.3 1.0 CZ A:ARG28 4.9 80.5 1.0

W.Hinrichs, G.J.Palm, L.Berndt, B.Girbardt. Tetr(D) E147A Mutant in Complex with Minocycline and Magnesium To Be Published.