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Chlorine in PDB 6rt9: Orthorhombic Lysozyme Grown with 300G/L Sucrose

Enzymatic activity of Orthorhombic Lysozyme Grown with 300G/L Sucrose

All present enzymatic activity of Orthorhombic Lysozyme Grown with 300G/L Sucrose:
3.2.1.17;

Protein crystallography data

The structure of Orthorhombic Lysozyme Grown with 300G/L Sucrose, PDB code: 6rt9 was solved by P.J.B.Pereira, C.Ferreira, P.M.Martins, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.79 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 30.065, 56.091, 72.455, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 22.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Orthorhombic Lysozyme Grown with 300G/L Sucrose (pdb code 6rt9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Orthorhombic Lysozyme Grown with 300G/L Sucrose, PDB code: 6rt9:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6rt9

Go back to Chlorine Binding Sites List in 6rt9
Chlorine binding site 1 out of 3 in the Orthorhombic Lysozyme Grown with 300G/L Sucrose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Orthorhombic Lysozyme Grown with 300G/L Sucrose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:16.8
occ:1.00
NH2 A:ARG125 3.3 18.0 1.0
NH1 A:ARG125 3.4 19.2 1.0
CB A:ALA122 3.8 15.9 1.0
CZ A:ARG125 3.8 18.5 1.0

Chlorine binding site 2 out of 3 in 6rt9

Go back to Chlorine Binding Sites List in 6rt9
Chlorine binding site 2 out of 3 in the Orthorhombic Lysozyme Grown with 300G/L Sucrose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Orthorhombic Lysozyme Grown with 300G/L Sucrose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:26.1
occ:1.00
O A:HOH355 2.5 50.9 1.0
O A:HOH484 2.7 37.4 1.0
OG A:SER24 3.0 18.5 1.0
N A:GLY26 3.0 13.5 1.0
CB A:SER24 3.4 16.4 1.0
CA A:GLY26 3.5 9.1 1.0
CA A:GLN121 3.6 14.7 1.0
N A:LEU25 4.0 9.0 1.0
N A:GLN121 4.0 15.1 1.0
O A:HOH391 4.0 27.8 1.0
CB A:GLN121 4.1 20.8 1.0
CD1 A:ILE124 4.1 21.2 1.0
C A:SER24 4.1 11.4 1.0
C A:LEU25 4.2 11.8 1.0
O A:VAL120 4.2 12.3 1.0
C A:VAL120 4.3 13.0 1.0
O A:HOH487 4.3 28.7 1.0
CG A:GLN121 4.3 29.3 1.0
CG1 A:ILE124 4.4 18.7 1.0
CA A:SER24 4.4 10.6 1.0
CG2 A:VAL120 4.4 12.4 1.0
CA A:LEU25 4.5 8.9 1.0
C A:GLY26 4.6 10.8 1.0
O A:SER24 4.6 11.9 1.0
N A:ASN27 4.7 10.1 1.0
C A:GLN121 4.7 16.2 1.0
O A:GLN121 4.8 16.6 1.0
CB A:LEU25 4.9 8.0 1.0

Chlorine binding site 3 out of 3 in 6rt9

Go back to Chlorine Binding Sites List in 6rt9
Chlorine binding site 3 out of 3 in the Orthorhombic Lysozyme Grown with 300G/L Sucrose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Orthorhombic Lysozyme Grown with 300G/L Sucrose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:24.1
occ:1.00
O A:HOH456 2.8 37.6 1.0
NH1 A:ARG114 3.5 27.0 0.5
O A:HOH311 3.5 39.3 1.0
CE1 A:PHE34 3.9 19.3 1.0
CD1 A:PHE34 4.7 21.8 1.0
CZ A:ARG114 4.8 20.2 0.5
CZ A:PHE34 4.8 18.6 1.0
CE A:LYS33 4.9 29.7 1.0

Reference:

C.Ferreira, P.J.B.Pereira, P.M.Martins. Orthorhombic Lysozyme Grown with 300G/L Sucrose To Be Published.
Page generated: Sat Jul 12 19:29:54 2025

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