Chlorine in PDB 6tlt: Ror(Gamma)T Ligand Binding Domain in Complex with Desmosterol and Allosteric Ligand Glenmark

The structure of Ror(Gamma)T Ligand Binding Domain in Complex with Desmosterol and Allosteric Ligand Glenmark, PDB code: 6tlt was solved by R.M.J.M.De Vries, F.A.Meijer, L.Brunsveld, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.02 / 2.11
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	108.727, 108.727, 104.734, 90.00, 90.00, 120.00
R / Rfree (%)	19.6 / 23.5

The binding sites of Chlorine atom in the Ror(Gamma)T Ligand Binding Domain in Complex with Desmosterol and Allosteric Ligand Glenmark (pdb code 6tlt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Ror(Gamma)T Ligand Binding Domain in Complex with Desmosterol and Allosteric Ligand Glenmark, PDB code: 6tlt:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Ror(Gamma)T Ligand Binding Domain in Complex with Desmosterol and Allosteric Ligand Glenmark


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ror(Gamma)T Ligand Binding Domain in Complex with Desmosterol and Allosteric Ligand Glenmark within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl601 b:75.3 occ:1.00 CL1 A:MJE601 0.0 75.3 1.0 C16 A:MJE601 1.7 73.6 1.0 C17 A:MJE601 2.7 70.3 1.0 C15 A:MJE601 2.7 67.6 1.0 C14 A:MJE601 3.0 69.4 1.0 O3 A:MJE601 3.3 76.5 1.0 CG A:GLN484 3.6 70.5 0.3 CD A:GLN484 3.7 74.0 0.7 NE2 A:GLN484 3.8 71.1 0.7 OE1 A:GLN484 3.8 86.7 0.7 N2 A:MJE601 3.9 72.9 1.0 C18 A:MJE601 3.9 68.0 1.0 C20 A:MJE601 3.9 62.3 1.0 O A:LEU505 4.1 0.0 1.0 CB A:LEU483 4.2 56.8 1.0 CG A:GLN484 4.2 68.7 0.7 CA A:GLN484 4.2 70.0 0.3 N A:GLN484 4.2 64.5 1.0 C A:LEU483 4.3 64.6 1.0 CE1 A:PHE506 4.3 88.9 1.0 CA A:GLN484 4.3 70.5 0.7 O A:LEU483 4.3 69.4 1.0 N1 A:MJE601 4.4 75.0 1.0 CZ A:PHE506 4.4 88.6 1.0 C19 A:MJE601 4.4 64.2 1.0 CB A:GLN484 4.5 71.4 0.3 CD2 A:LEU505 4.6 73.6 1.0 CD A:GLN484 4.6 68.2 0.3 CB A:LEU505 4.7 83.4 1.0 CB A:GLN487 4.7 70.5 1.0 O A:VAL480 4.7 63.9 1.0 OE1 A:GLN484 4.8 68.8 0.3 C4 A:MJE601 4.8 73.5 1.0 CB A:GLN484 4.9 70.8 0.7 CG A:GLN487 4.9 76.4 1.0 CA A:LEU483 4.9 51.8 1.0 CD1 A:PHE506 4.9 94.8 1.0 C A:LEU505 4.9 0.7 1.0

Chlorine binding site 2 out of 2 in the Ror(Gamma)T Ligand Binding Domain in Complex with Desmosterol and Allosteric Ligand Glenmark


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ror(Gamma)T Ligand Binding Domain in Complex with Desmosterol and Allosteric Ligand Glenmark within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl601 b:64.9 occ:1.00 CL2 A:MJE601 0.0 64.9 1.0 C20 A:MJE601 1.7 62.3 1.0 C19 A:MJE601 2.7 64.2 1.0 C15 A:MJE601 2.7 67.6 1.0 C14 A:MJE601 3.0 69.4 1.0 N2 A:MJE601 3.3 72.9 1.0 N1 A:MJE601 3.3 75.0 1.0 CG2 A:THR325 3.5 46.8 1.0 C A:LEU324 3.6 52.3 1.0 CE A:MET358 3.6 59.1 1.0 CB A:LEU324 3.6 50.3 1.0 N A:THR325 3.6 49.9 1.0 O3 A:MJE601 3.7 76.5 1.0 O A:LEU324 3.7 55.1 1.0 CA A:THR325 3.8 54.7 1.0 C18 A:MJE601 3.9 68.0 1.0 C16 A:MJE601 3.9 73.6 1.0 CG1 A:ILE328 4.1 47.9 1.0 CD1 A:LEU483 4.1 62.6 1.0 CB A:THR325 4.2 57.2 1.0 CA A:LEU324 4.3 46.0 1.0 C6 A:MJE601 4.3 73.2 1.0 C4 A:MJE601 4.3 73.5 1.0 C17 A:MJE601 4.5 70.3 1.0 O A:ALA321 4.7 54.5 1.0 CG A:LEU324 4.8 48.5 1.0 C8 A:MJE601 4.8 59.8 1.0 C5 A:MJE601 4.8 73.1 1.0 CB A:ILE328 4.9 48.2 1.0 CD1 A:LEU324 5.0 46.8 1.0

R.M.J.M.De Vries, F.A.Meijer, R.G.Doveston, L.Brunsveld. Ror(Gamma)T Ligand Binding Domain in Complex with 25-Hydroxycholesterol and Allosteric Ligand Glenmark To Be Published.