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Chlorine in PDB 6ub5: Crystal Structure (P21 Form) of A GH128 (Subgroup IV) Endo-Beta-1,3- Glucanase From Lentinula Edodes (LEGH128_IV) in Complex with Laminaritriose

Protein crystallography data

The structure of Crystal Structure (P21 Form) of A GH128 (Subgroup IV) Endo-Beta-1,3- Glucanase From Lentinula Edodes (LEGH128_IV) in Complex with Laminaritriose, PDB code: 6ub5 was solved by C.R.Santos, E.A.Lima, F.Mandelli, M.T.Murakami, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.09 / 1.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.806, 47.710, 52.517, 90.00, 110.81, 90.00
R / Rfree (%) 16.9 / 18.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure (P21 Form) of A GH128 (Subgroup IV) Endo-Beta-1,3- Glucanase From Lentinula Edodes (LEGH128_IV) in Complex with Laminaritriose (pdb code 6ub5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure (P21 Form) of A GH128 (Subgroup IV) Endo-Beta-1,3- Glucanase From Lentinula Edodes (LEGH128_IV) in Complex with Laminaritriose, PDB code: 6ub5:

Chlorine binding site 1 out of 1 in 6ub5

Go back to Chlorine Binding Sites List in 6ub5
Chlorine binding site 1 out of 1 in the Crystal Structure (P21 Form) of A GH128 (Subgroup IV) Endo-Beta-1,3- Glucanase From Lentinula Edodes (LEGH128_IV) in Complex with Laminaritriose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure (P21 Form) of A GH128 (Subgroup IV) Endo-Beta-1,3- Glucanase From Lentinula Edodes (LEGH128_IV) in Complex with Laminaritriose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:16.9
occ:1.00
OG A:SER136 2.8 10.4 1.0
N A:SER136 3.0 8.0 1.0
O A:HOH563 3.1 15.1 1.0
N A:TYR168 3.6 6.0 1.0
CA A:THR135 3.7 7.1 1.0
CB A:SER136 3.7 9.7 1.0
CB A:THR135 3.7 7.2 1.0
O A:HIS166 3.8 6.1 1.0
CD2 A:TYR168 3.8 6.2 1.0
CA A:TRP167 3.8 5.8 1.0
C A:THR135 3.8 7.3 1.0
C A:HIS166 3.9 5.9 1.0
CA A:SER136 3.9 9.0 1.0
N A:TRP167 4.0 5.8 1.0
C A:TRP167 4.0 5.8 1.0
CB A:HIS166 4.0 5.7 1.0
O A:HOH744 4.4 27.4 1.0
CG2 A:THR135 4.5 7.2 1.0
CB A:TYR168 4.5 6.3 1.0
CE2 A:TYR168 4.6 6.2 1.0
CA A:HIS166 4.6 5.8 1.0
CG A:TYR168 4.6 6.3 1.0
CA A:TYR168 4.6 6.3 1.0
O A:TYR168 4.7 7.5 1.0
OG1 A:THR135 4.8 7.3 1.0
C A:SER136 4.8 9.6 1.0
N A:SER137 4.9 10.4 1.0
O A:HOH608 5.0 17.5 1.0

Reference:

C.R.Santos, E.A.Lima, F.Mandelli, M.T.Murakami. Structural Insights Into Beta-1,3-Glucan Cleavage By A Glycoside Hydrolase Family Nat.Chem.Biol. 2020.
ISSN: ESSN 1552-4469
DOI: 10.1038/S41589-020-0554-5
Page generated: Sat Jul 12 20:28:06 2025

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