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Chlorine in PDB 6uci: Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form

Protein crystallography data

The structure of Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form, PDB code: 6uci was solved by Z.Yin, M.Machius, G.Rudenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.67 / 2.09
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 72.278, 97.497, 45.197, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 24.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form (pdb code 6uci). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form, PDB code: 6uci:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6uci

Go back to Chlorine Binding Sites List in 6uci
Chlorine binding site 1 out of 3 in the Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:40.0
occ:1.00
HH11 A:ARG175 2.5 29.8 1.0
HD2 A:ARG175 3.0 34.3 1.0
HB3 A:LYS171 3.0 26.2 1.0
O B:HOH418 3.1 33.4 1.0
HG3 A:ARG175 3.2 32.3 1.0
NH1 A:ARG175 3.3 24.8 1.0
HD3 A:LYS171 3.3 64.4 1.0
HH12 A:ARG175 3.6 29.8 1.0
HD2 A:LYS171 3.6 64.4 1.0
HG2 A:ARG175 3.6 32.3 1.0
CG A:ARG175 3.7 26.9 1.0
CD A:ARG175 3.7 28.6 1.0
CD A:LYS171 3.8 53.7 1.0
CB A:LYS171 4.0 21.8 1.0
HB2 A:LYS171 4.3 26.2 1.0
CZ A:ARG175 4.3 29.5 1.0
HH22 B:ARG176 4.4 43.9 1.0
CG A:LYS171 4.5 32.4 1.0
HD3 A:ARG175 4.5 34.3 1.0
NE A:ARG175 4.5 31.2 1.0
HG2 A:LYS171 4.7 38.9 1.0
O A:LYS171 4.7 19.4 1.0
HZ3 A:LYS171 4.8 79.2 1.0
C A:LYS171 4.9 17.3 1.0
CA A:LYS171 4.9 16.0 1.0
HZ2 A:LYS171 4.9 79.2 1.0
O A:HOH403 5.0 35.1 1.0
NH2 B:ARG176 5.0 36.5 1.0

Chlorine binding site 2 out of 3 in 6uci

Go back to Chlorine Binding Sites List in 6uci
Chlorine binding site 2 out of 3 in the Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:72.0
occ:1.00
HZ1 B:LYS171 3.0 0.7 1.0
HE2 B:LYS171 3.3 77.2 1.0
HE3 B:LYS171 3.3 77.2 1.0
CE B:LYS171 3.6 64.3 1.0
NZ B:LYS171 3.7 92.3 1.0
HZ3 B:LYS171 4.2 0.7 1.0
HZ2 B:LYS171 4.3 0.7 1.0
HD11 B:LEU167 4.5 69.9 1.0

Chlorine binding site 3 out of 3 in 6uci

Go back to Chlorine Binding Sites List in 6uci
Chlorine binding site 3 out of 3 in the Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Transcription Factor Deltafosb Bzip Domain Self-Assembly, Oxidized Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl301

b:55.9
occ:1.00
H D:LYS219 2.3 96.2 0.5
H D:LYS219 2.3 96.2 0.5
HH11 B:ARG182 2.7 49.2 1.0
HD3 B:ARG182 2.7 83.2 1.0
HG3 D:LYS219 2.8 68.6 1.0
HA D:HIS218 3.1 90.0 1.0
N D:LYS219 3.1 80.2 1.0
HB2 D:LYS219 3.2 60.3 1.0
NH1 B:ARG182 3.4 41.0 1.0
ND1 D:HIS218 3.4 1.0 1.0
CE1 D:HIS218 3.5 0.4 1.0
CG D:LYS219 3.6 57.1 1.0
CD B:ARG182 3.6 69.3 1.0
CG D:HIS218 3.7 0.1 1.0
CB D:LYS219 3.7 50.2 1.0
HH12 B:ARG182 3.7 49.2 1.0
NE2 D:HIS218 3.8 0.6 1.0
CA D:HIS218 3.8 75.0 1.0
HB2 B:ARG182 3.8 29.0 1.0
HE1 D:HIS218 3.8 0.3 1.0
HD2 B:ARG182 3.8 83.2 1.0
CD2 D:HIS218 3.9 0.6 1.0
C D:HIS218 4.0 70.9 1.0
CA D:LYS219 4.0 78.2 1.0
HD2 D:LYS219 4.0 71.7 1.0
HE2 D:HIS218 4.2 0.1 1.0
CZ B:ARG182 4.2 66.3 1.0
HG2 D:LYS219 4.3 68.6 1.0
NE B:ARG182 4.3 70.9 1.0
CB D:HIS218 4.3 83.7 1.0
CD D:LYS219 4.4 59.8 1.0
HA B:ARG182 4.4 28.9 1.0
HD2 D:HIS218 4.4 0.5 1.0
CB B:ARG182 4.6 24.2 1.0
HB3 D:LYS219 4.6 60.3 1.0
CG B:ARG182 4.6 45.0 1.0
HA D:LYS219 4.7 93.9 1.0
HE3 D:LYS219 4.7 72.7 1.0
O D:ALA217 4.8 34.8 1.0
HG2 B:ARG182 4.9 54.1 1.0
HB2 D:HIS218 4.9 0.4 1.0

Reference:

Y.Zhou, H.Venkannagari, H.Lynch, G.Aglyamova, M.Bhandari, M.Machius, E.J.Nestler, A.J.Robison, G.Rudenko. Self-Assembly of the Bzip Transcription Factor Delta-Fosb Curr Res Struct Biol 2019.
DOI: 10.1016/J.CRSTBI.2019.12.001
Page generated: Sat Jul 12 20:28:58 2025

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