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Chlorine in PDB 6ud6: Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions

Protein crystallography data

The structure of Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions, PDB code: 6ud6 was solved by J.H.Mills, P.R.Gleason, C.R.Simmons, J.N.Henderson, B.K.Kartchner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.63 / 1.50
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 57.519, 57.519, 173.026, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 19

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions (pdb code 6ud6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions, PDB code: 6ud6:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6ud6

Go back to Chlorine Binding Sites List in 6ud6
Chlorine binding site 1 out of 2 in the Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:25.1
occ:1.00
O A:HOH402 3.1 35.3 1.0
N A:ASP36 3.1 24.5 1.0
O A:HOH346 3.3 29.1 1.0
N A:ALA38 3.4 16.2 1.0
C A:GLY34 3.5 22.4 1.0
CB A:ALA38 3.6 18.3 1.0
CA A:GLY34 3.6 20.8 1.0
N A:GLY37 3.6 17.9 1.0
CA A:ASP36 3.6 25.6 1.0
N A:ALA35 3.6 24.1 1.0
C A:ASP36 3.6 25.1 1.0
CB A:ASP36 3.6 27.5 1.0
O A:GLY34 3.9 22.2 1.0
CA A:ALA38 4.1 16.1 1.0
C A:ALA35 4.2 24.9 1.0
O A:ASP36 4.3 27.4 1.0
C A:GLY37 4.4 16.1 1.0
CA A:ALA35 4.5 24.2 1.0
N A:GLY34 4.5 18.5 1.0
CA A:GLY37 4.6 17.0 1.0
CG A:ASP36 4.6 40.6 1.0
OD2 A:ASP36 4.8 49.9 1.0
O A:HOH347 4.8 30.6 1.0
O A:ALA38 5.0 20.3 1.0
O A:HOH398 5.0 33.8 1.0

Chlorine binding site 2 out of 2 in 6ud6

Go back to Chlorine Binding Sites List in 6ud6
Chlorine binding site 2 out of 2 in the Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl205

b:25.2
occ:1.00
O B:HOH413 3.1 35.7 1.0
O B:HOH373 3.1 27.6 1.0
N B:ASP36 3.1 24.5 1.0
N B:ALA38 3.4 15.9 1.0
C B:GLY34 3.5 22.4 1.0
CB B:ALA38 3.6 18.4 1.0
CA B:GLY34 3.6 20.2 1.0
N B:GLY37 3.6 19.0 1.0
N B:ALA35 3.6 24.4 1.0
CA B:ASP36 3.7 27.2 1.0
C B:ASP36 3.7 25.3 1.0
CB B:ASP36 3.7 27.8 1.0
O B:GLY34 4.0 22.5 1.0
CA B:ALA38 4.1 18.4 1.0
C B:ALA35 4.2 24.5 1.0
O B:ASP36 4.4 27.7 1.0
C B:GLY37 4.4 15.6 1.0
CA B:ALA35 4.5 24.2 1.0
N B:GLY34 4.6 18.9 1.0
CA B:GLY37 4.6 16.1 1.0
CG B:ASP36 4.7 41.2 1.0
OD2 B:ASP36 4.8 47.7 1.0
O B:HOH408 4.9 34.7 1.0
O B:HOH372 4.9 30.9 1.0

Reference:

J.H.Mills, P.R.Gleason, C.R.Simmons, J.N.Henderson, B.K.Kartchner. Spectroscopic and Structural Characterization of A Genetically Encoded Direct Sensor For Protein-Ligand Interactions. To Be Published.
Page generated: Sat Jul 12 20:30:29 2025

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