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Chlorine in PDB 6udl: Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700

Enzymatic activity of Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700

All present enzymatic activity of Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700:
1.14.14.1; 4.2.1.152;

Protein crystallography data

The structure of Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700, PDB code: 6udl was solved by A.G.Bart, E.E.Scott, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.80 / 2.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.371, 196.147, 237.222, 90.00, 90.00, 90.00
R / Rfree (%) 23.8 / 28.7

Other elements in 6udl:

The structure of Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700 also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700 (pdb code 6udl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700, PDB code: 6udl:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6udl

Go back to Chlorine Binding Sites List in 6udl
Chlorine binding site 1 out of 2 in the Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl602

b:86.1
occ:1.00
CL1 A:Q4M602 0.0 86.1 1.0
C02 A:Q4M602 1.7 68.5 1.0
H021 A:Q4M602 2.1 68.5 1.0
H022 A:Q4M602 2.2 68.5 1.0
H041 A:Q4M602 2.4 61.7 1.0
C03 A:Q4M602 2.4 64.7 1.0
H031 A:Q4M602 2.5 64.7 1.0
H042 A:Q4M602 2.5 61.7 1.0
HG A:LEU312 2.6 78.2 1.0
C04 A:Q4M602 2.6 61.7 1.0
HD23 A:LEU312 2.9 82.5 1.0
HG A:SER116 3.0 76.0 1.0
HD21 A:LEU312 3.1 82.5 1.0
CD2 A:LEU312 3.2 68.5 1.0
CG A:LEU312 3.3 65.0 1.0
HG23 A:ILE115 3.4 71.2 1.0
OG A:SER116 3.5 63.1 1.0
C20 A:Q4M602 3.8 65.6 1.0
HB3 A:LEU312 3.8 77.2 1.0
HG22 A:ILE115 4.0 71.2 1.0
N05 A:Q4M602 4.0 61.2 1.0
CG2 A:ILE115 4.1 59.2 1.0
CB A:LEU312 4.2 64.1 1.0
H A:SER116 4.2 71.7 1.0
HD22 A:LEU312 4.2 82.5 1.0
HE2 A:PHE224 4.3 74.6 1.0
O A:LEU312 4.4 61.4 1.0
HA A:ASP313 4.4 69.6 1.0
HG21 A:ILE115 4.4 71.2 1.0
CD1 A:LEU312 4.5 67.7 1.0
C A:LEU312 4.5 62.1 1.0
HD11 A:LEU312 4.5 81.5 1.0
HB3 A:PHE258 4.5 80.2 1.0
H271 A:Q4M602 4.5 65.9 1.0
C19 A:Q4M602 4.5 65.1 1.0
HD12 A:LEU312 4.7 81.5 1.0
N A:SER116 4.7 59.6 1.0
C21 A:Q4M602 4.7 63.9 1.0
O18 A:Q4M602 4.8 63.1 1.0
N A:ASP313 4.8 59.6 1.0
CB A:SER116 4.8 61.1 1.0
HA3 A:GLY316 4.9 70.3 1.0
CA A:LEU312 4.9 62.0 1.0
HB2 A:LEU312 4.9 77.2 1.0
C27 A:Q4M602 5.0 65.9 1.0
OD1 A:ASP313 5.0 67.2 1.0
CE2 A:PHE224 5.0 62.0 1.0
C06 A:Q4M602 5.0 60.0 1.0

Chlorine binding site 2 out of 2 in 6udl

Go back to Chlorine Binding Sites List in 6udl
Chlorine binding site 2 out of 2 in the Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Human Cytochrome P450 1A1 with Duocarmycin Prodrug (S) Ict-2700 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl602

b:71.7
occ:1.00
CL1 B:Q4M602 0.0 71.7 1.0
C02 B:Q4M602 2.0 57.1 1.0
H021 B:Q4M602 2.4 57.1 1.0
H022 B:Q4M602 2.4 57.1 1.0
H B:SER116 2.6 57.6 1.0
H031 B:Q4M602 2.9 55.6 1.0
C03 B:Q4M602 3.0 55.6 1.0
OD1 B:ASN255 3.2 51.5 1.0
HA B:ASN255 3.2 66.1 1.0
HG23 B:ILE115 3.2 53.4 1.0
HB3 B:ASN255 3.3 61.4 1.0
N B:SER116 3.4 47.8 1.0
HD21 B:LEU312 3.5 61.5 1.0
H042 B:Q4M602 3.5 49.2 1.0
HA B:ILE115 3.6 53.3 1.0
HB3 B:PHE258 3.7 65.8 1.0
HG B:LEU312 3.8 56.1 1.0
HA B:SER116 3.8 51.8 1.0
HB2 B:PHE258 3.8 65.8 1.0
C04 B:Q4M602 3.8 49.2 1.0
CB B:ASN255 3.8 51.0 1.0
CA B:ASN255 3.9 54.9 1.0
CG B:ASN255 3.9 51.8 1.0
O B:ASN255 3.9 49.6 1.0
OG B:SER116 3.9 49.2 1.0
HD23 B:LEU312 4.0 61.5 1.0
CD2 B:LEU312 4.1 51.0 1.0
H041 B:Q4M602 4.1 49.2 1.0
CA B:SER116 4.1 42.9 1.0
CG2 B:ILE115 4.2 44.3 1.0
CB B:PHE258 4.2 54.7 1.0
HD1 B:TYR259 4.2 55.7 1.0
C20 B:Q4M602 4.3 54.0 1.0
H271 B:Q4M602 4.3 59.9 1.0
CA B:ILE115 4.3 44.2 1.0
C B:ASN255 4.3 52.4 1.0
C B:ILE115 4.3 45.7 1.0
CG B:LEU312 4.4 46.6 1.0
HG22 B:ILE115 4.5 53.4 1.0
HE2 B:PHE224 4.5 58.0 1.0
HG B:SER116 4.6 59.2 1.0
CB B:SER116 4.6 44.1 1.0
HD11 B:LEU312 4.6 64.0 1.0
HG21 B:ILE115 4.7 53.4 1.0
HB2 B:ASN255 4.8 61.4 1.0
HG12 B:ILE115 4.8 51.7 1.0
HD2 B:PHE258 4.8 68.1 1.0
CB B:ILE115 4.8 43.6 1.0
C27 B:Q4M602 4.9 59.9 1.0
H B:TYR259 4.9 62.1 1.0
HD22 B:LEU312 5.0 61.5 1.0
HB2 B:TYR259 5.0 57.0 1.0
C21 B:Q4M602 5.0 56.6 1.0

Reference:

A.G.Bart, E.E.Scott. Designed Duocarmycin Prodrugs For Human Cytochrome P450 1A1 and 2W1 To Be Published.
Page generated: Sat Jul 12 20:30:54 2025

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