Atomistry » Chlorine » PDB 6urc-6v4w » 6v4w
Atomistry »
  Chlorine »
    PDB 6urc-6v4w »
      6v4w »

Chlorine in PDB 6v4w: The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588

Enzymatic activity of The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588

All present enzymatic activity of The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588:
3.5.2.6;

Protein crystallography data

The structure of The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588, PDB code: 6v4w was solved by K.Tan, L.Welk, M.Endres, A.Joachimiak, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.48 / 1.29
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 75.702, 76.313, 89.376, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 18.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588 (pdb code 6v4w). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588, PDB code: 6v4w:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 6v4w

Go back to Chlorine Binding Sites List in 6v4w
Chlorine binding site 1 out of 8 in the The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:17.0
occ:0.88
 O B:HOH652 3.1 25.3 1.0
O B:HOH523 3.1 16.0 1.0
O A:HOH623 3.2 25.7 1.0
O B:HOH489 3.2 18.9 1.0
ND2 A:ASN275 3.4 15.0 1.0
O A:HOH680 3.8 35.6 1.0
CB A:ASN275 3.9 14.1 1.0
CB B:LYS213 4.1 14.1 1.0
CG A:ASN275 4.2 13.3 1.0
CG1 B:VAL231 4.2 15.1 1.0
CG2 B:VAL231 4.3 15.5 1.0
O B:LYS213 4.4 14.9 1.0
CD B:LYS213 4.5 15.6 1.0
CA B:VAL231 4.5 13.6 1.0
CG B:LYS213 4.6 14.2 1.0
CB B:VAL231 4.6 14.5 1.0
O A:HOH467 4.7 19.2 1.0
O A:HOH490 4.8 16.6 1.0
O B:HOH488 4.9 30.3 1.0
C B:LYS213 5.0 13.5 1.0

Chlorine binding site 2 out of 8 in 6v4w

Go back to Chlorine Binding Sites List in 6v4w
Chlorine binding site 2 out of 8 in the The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:23.8
occ:0.77
 O A:HOH622 3.0 23.7 1.0
N A:THR146 3.2 16.3 1.0
O A:HOH585 3.3 25.0 1.0
NH2 A:ARG169 3.3 23.6 1.0
NH1 A:ARG169 3.3 23.9 1.0
OG1 A:THR146 3.5 18.3 1.0
CG2 A:THR146 3.7 19.9 1.0
CZ A:ARG169 3.7 23.8 1.0
CA A:GLY145 3.7 18.0 1.0
CB A:THR146 4.0 17.7 1.0
C A:GLY145 4.0 16.0 1.0
CA A:THR146 4.2 15.9 1.0
ND2 A:ASN166 4.6 18.6 1.0
O A:HOH464 4.9 19.6 1.0
CG A:ASN166 4.9 17.7 1.0
CB A:ASN166 5.0 16.2 1.0

Chlorine binding site 3 out of 8 in 6v4w

Go back to Chlorine Binding Sites List in 6v4w
Chlorine binding site 3 out of 8 in the The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:48.1
occ:1.00
 N A:LYS175 3.2 18.9 1.0
N A:TRP174 3.5 19.6 1.0
CG A:LYS175 3.6 28.1 1.0
CB A:LYS175 3.6 23.8 1.0
CB A:ALA173 3.8 19.0 1.0
O A:HOH580 3.8 27.9 1.0
CB A:TRP174 4.0 21.5 1.0
CA A:LYS175 4.1 20.0 1.0
CA A:TRP174 4.1 20.1 1.0
C A:ALA173 4.1 17.1 1.0
C A:TRP174 4.1 19.4 1.0
CD A:LYS175 4.2 31.2 1.0
CA A:ALA173 4.4 17.6 1.0
O A:HOH672 4.4 41.8 1.0
CE A:LYS175 4.8 34.1 1.0
O A:ALA173 4.9 17.2 1.0
CG A:TRP174 5.0 21.5 1.0

Chlorine binding site 4 out of 8 in 6v4w

Go back to Chlorine Binding Sites List in 6v4w
Chlorine binding site 4 out of 8 in the The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:37.8
occ:0.76
 NE2 A:GLN189 2.5 16.1 0.6
O A:HOH472 3.0 40.6 1.0
N A:ASP159 3.0 20.0 1.0
N A:SER160 3.0 16.7 1.0
OE1 A:GLN189 3.5 19.6 0.4
CD A:GLN189 3.7 15.2 0.6
OG A:SER160 3.7 20.7 1.0
CB A:SER160 3.7 17.5 1.0
CA A:ASP159 3.7 20.9 1.0
C A:ASP159 3.9 19.2 1.0
CB A:ASP159 3.9 24.9 1.0
C A:VAL158 3.9 20.7 1.0
CA A:SER160 3.9 15.7 1.0
OE1 A:GLN189 4.0 18.4 0.6
CA A:VAL158 4.1 19.1 1.0
O A:GLY157 4.2 19.9 1.0
CB A:ALA186 4.3 14.5 1.0
CA A:ALA186 4.5 13.5 1.0
O A:HOH447 4.6 17.4 1.0
CD A:GLN189 4.7 18.9 0.4
CG1 A:VAL158 4.7 21.0 1.0
CG A:ASP159 4.7 30.1 1.0
C A:SER160 4.9 14.1 1.0
O A:VAL158 4.9 24.1 1.0
CG A:GLN189 5.0 14.1 0.6

Chlorine binding site 5 out of 8 in 6v4w

Go back to Chlorine Binding Sites List in 6v4w
Chlorine binding site 5 out of 8 in the The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl304

b:21.2
occ:0.75
 NE1 B:TRP291 3.1 16.2 1.0
O B:HOH467 3.3 24.4 1.0
CG B:PRO227 3.7 15.1 1.0
CD1 B:TRP291 3.9 15.9 1.0
NH2 B:ARG288 3.9 17.8 1.0
CD B:PRO227 3.9 13.9 1.0
CZ B:ARG288 4.0 16.0 1.0
NE B:ARG288 4.0 15.8 1.0
CE2 B:TRP291 4.1 16.1 1.0
CZ2 B:TRP291 4.5 16.9 1.0
OD1 B:ASP292 4.6 18.3 1.0
NH1 B:ARG288 4.7 16.4 1.0
OD1 B:ASN295 4.8 42.9 1.0
CD B:ARG288 4.8 15.9 1.0

Chlorine binding site 6 out of 8 in 6v4w

Go back to Chlorine Binding Sites List in 6v4w
Chlorine binding site 6 out of 8 in the The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl305

b:21.1
occ:0.73
 N B:GLY218 2.9 17.6 1.0
O B:HOH622 3.1 19.4 1.0
NE B:ARG223 3.1 16.3 1.0
O B:THR215 3.2 16.1 1.0
NE2 B:HIS234 3.4 14.7 1.0
C B:GLY218 3.4 17.5 1.0
C B:THR216 3.4 14.7 1.0
N B:THR217 3.5 14.9 1.0
CA B:GLY218 3.5 18.1 1.0
CE1 B:HIS234 3.5 14.9 1.0
CA B:THR216 3.6 15.2 1.0
N B:PRO219 3.6 15.3 1.0
CD B:ARG223 3.7 15.9 1.0
O B:GLY218 3.7 18.1 1.0
C B:THR215 3.8 14.0 1.0
O B:THR216 3.9 16.4 1.0
N B:THR216 4.0 14.5 1.0
C B:THR217 4.0 18.9 1.0
CZ B:ARG223 4.2 15.2 1.0
CD B:PRO219 4.2 15.0 1.0
CA B:PRO219 4.2 15.0 1.0
CA B:THR217 4.3 16.5 1.0
O B:HOH440 4.3 14.0 1.0
NH2 B:ARG223 4.4 15.7 1.0
CG2 B:THR215 4.4 15.6 1.0
CG B:ARG223 4.4 15.1 1.0
O B:HOH475 4.6 22.1 1.0
CD2 B:HIS234 4.7 13.1 1.0
ND1 B:HIS234 4.9 13.7 1.0
CB B:THR215 4.9 15.3 1.0
CA B:THR215 5.0 13.8 1.0
CB B:PRO219 5.0 14.8 1.0

Chlorine binding site 7 out of 8 in 6v4w

Go back to Chlorine Binding Sites List in 6v4w
Chlorine binding site 7 out of 8 in the The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl306

b:28.5
occ:0.79
 O B:HOH599 2.8 32.2 1.0
O B:HOH558 2.9 21.5 1.0
N B:ASP240 3.0 18.4 1.0
CB B:ASP240 3.5 25.4 1.0
OD2 B:ASP240 3.7 35.3 1.0
CG B:ASP240 3.7 31.9 1.0
CB B:SER239 3.7 17.3 1.0
CZ3 B:TRP174 3.8 21.1 1.0
CA B:SER239 3.8 16.4 1.0
CA B:ASP240 3.8 20.9 1.0
C B:SER239 3.9 17.8 1.0
NE2 B:GLN177 3.9 19.8 1.0
NE2 B:GLN67 3.9 19.9 1.0
CE3 B:TRP174 4.1 20.8 1.0
OE1 B:GLN177 4.2 19.7 1.0
O B:HOH619 4.3 31.2 1.0
CD B:GLN177 4.3 19.2 1.0
OD1 B:ASP240 4.4 34.3 1.0
C B:ASP240 4.5 20.3 1.0
O B:ASP240 4.6 18.9 1.0
OG B:SER239 4.7 17.3 1.0
O B:HOH547 4.7 31.0 1.0
CH2 B:TRP174 4.8 20.9 1.0
O B:HOH501 4.9 19.1 1.0
CD B:GLN67 5.0 18.5 1.0

Chlorine binding site 8 out of 8 in 6v4w

Go back to Chlorine Binding Sites List in 6v4w
Chlorine binding site 8 out of 8 in the The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl307

b:29.6
occ:0.83
 N B:VAL92 3.1 16.6 1.0
CB B:VAL92 3.6 20.4 1.0
CG2 B:VAL92 3.7 21.5 1.0
CA B:GLN91 3.8 17.1 1.0
CA B:VAL92 3.9 17.6 1.0
C B:GLN91 3.9 17.4 1.0
CB B:GLN91 4.2 17.9 1.0
O B:VAL92 4.4 20.9 1.0
C B:VAL92 4.7 18.3 1.0
O B:ASP90 4.7 19.9 1.0

Reference:

K.Tan, L.Welk, M.Endres, A.Joachimiak. The Crystal Structure of A Beta-Lactamase From Chitinophaga Pinensis Dsm 2588 To Be Published.
Page generated: Sat Jul 12 20:43:26 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy