Atomistry » Chlorine » PDB 6vcm-6vkv » 6vjj
Atomistry »
  Chlorine »
    PDB 6vcm-6vkv »
      6vjj »

Chlorine in PDB 6vjj: Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf

Enzymatic activity of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf

All present enzymatic activity of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf, PDB code: 6vjj was solved by T.H.Tran, S.Dharmaiah, D.K.Simanshu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.03 / 1.40
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.132, 67.572, 71.260, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 19.5

Other elements in 6vjj:

The structure of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf (pdb code 6vjj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf, PDB code: 6vjj:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6vjj

Go back to Chlorine Binding Sites List in 6vjj
Chlorine binding site 1 out of 3 in the Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:35.9
occ:1.00
 O A:HOH331 2.9 24.7 1.0
NH1 A:ARG135 3.1 20.6 1.0
CD A:ARG135 3.7 20.4 1.0
CA A:GLY138 3.7 15.6 1.0
C A:GLY138 3.9 15.2 1.0
N A:ILE139 4.1 14.0 1.0
CZ A:ARG135 4.2 20.4 1.0
O A:GLY138 4.4 17.3 1.0
CA A:ARG135 4.4 14.6 1.0
NE A:ARG135 4.4 21.9 1.0
O A:ILE139 4.4 15.3 1.0
O A:ARG135 4.6 15.5 1.0
N A:GLY138 4.6 16.8 1.0
O A:ALA134 4.8 14.3 1.0
C A:ILE139 4.9 13.7 1.0
CG A:ARG135 4.9 19.6 1.0

Chlorine binding site 2 out of 3 in 6vjj

Go back to Chlorine Binding Sites List in 6vjj
Chlorine binding site 2 out of 3 in the Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:59.5
occ:1.00
 O A:HOH307 3.0 43.0 1.0
NE2 A:GLN43 3.1 27.3 1.0
CG A:GLN43 3.8 19.6 1.0
CD A:GLN43 3.9 20.7 1.0
CG2 A:THR50 4.0 30.4 1.0
CG2 A:VAL45 4.0 25.2 1.0
CB A:GLN43 4.7 18.1 1.0
O A:GLN43 4.8 21.7 1.0
C A:GLN43 4.8 21.2 1.0
OG1 A:THR50 4.8 31.0 1.0
N A:VAL44 4.9 20.6 1.0
N A:VAL45 4.9 19.2 1.0
CA A:VAL44 5.0 19.5 0.5
C A:VAL44 5.0 19.8 1.0

Chlorine binding site 3 out of 3 in 6vjj

Go back to Chlorine Binding Sites List in 6vjj
Chlorine binding site 3 out of 3 in the Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:26.5
occ:1.00
 O B:HOH348 2.6 42.8 1.0
O A:HOH388 3.8 35.6 1.0
N A:MET67 3.8 18.6 0.9
CB A:MET67 3.9 22.9 0.9
CA A:TYR64 4.0 15.4 1.0
CB A:ALA66 4.2 19.6 1.0
CD1 A:TYR64 4.2 23.7 1.0
O A:HOH335 4.3 21.9 1.0
O A:TYR64 4.3 17.9 1.0
C A:TYR64 4.3 16.6 1.0
CB A:TYR64 4.3 18.6 1.0
CA A:MET67 4.4 20.9 0.9
O A:GLU63 4.4 17.3 0.8
C A:ALA66 4.6 20.1 1.0
N A:ALA66 4.6 17.1 1.0
CA A:ALA66 4.7 17.4 1.0
CG A:TYR64 4.8 19.6 1.0

Reference:

T.H.Tran, D.K.Simanshu. Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf To Be Published.
Page generated: Sat Jul 12 20:56:59 2025

Last articles

Mg in 2VSC
Mg in 2VPN
Mg in 2VRN
Mg in 2VPQ
Mg in 2VQD
Mg in 2VQ2
Mg in 2VPR
Mg in 2VPO
Mg in 2VP0
Mg in 2VOS
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy