Atomistry » Chlorine » PDB 6vke-6vww » 6vud
Atomistry »
  Chlorine »
    PDB 6vke-6vww »
      6vud »

Chlorine in PDB 6vud: Crystal Structure of A Ribosome Recycling Factor From Ehrlichia Chaffeensis

Protein crystallography data

The structure of Crystal Structure of A Ribosome Recycling Factor From Ehrlichia Chaffeensis, PDB code: 6vud was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.92 / 2.35
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 79.660, 93.230, 73.420, 90.00, 109.73, 90.00
R / Rfree (%) 19 / 23.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Ribosome Recycling Factor From Ehrlichia Chaffeensis (pdb code 6vud). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of A Ribosome Recycling Factor From Ehrlichia Chaffeensis, PDB code: 6vud:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 6vud

Go back to Chlorine Binding Sites List in 6vud
Chlorine binding site 1 out of 4 in the Crystal Structure of A Ribosome Recycling Factor From Ehrlichia Chaffeensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Ribosome Recycling Factor From Ehrlichia Chaffeensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl200

b:0.1
occ:1.00
NH1 A:ARG12 3.7 94.5 1.0
NE A:ARG12 3.7 90.9 1.0
CZ A:ARG12 4.1 97.6 1.0
O B:HOH330 4.1 71.3 1.0
OG B:SER16 4.2 81.3 1.0
CG1 A:ILE131 4.2 77.2 1.0
OG B:SER127 4.3 67.9 1.0
CE2 B:TYR20 4.5 55.1 0.4
CD1 A:ILE131 4.6 74.0 1.0
OH B:TYR20 4.7 53.7 0.4
CD A:ARG12 4.8 81.6 1.0
CA B:SER16 4.8 65.6 1.0
CG A:ARG12 4.8 79.4 1.0
CG1 B:VAL19 4.9 73.5 1.0
CB B:SER16 4.9 62.8 1.0

Chlorine binding site 2 out of 4 in 6vud

Go back to Chlorine Binding Sites List in 6vud
Chlorine binding site 2 out of 4 in the Crystal Structure of A Ribosome Recycling Factor From Ehrlichia Chaffeensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Ribosome Recycling Factor From Ehrlichia Chaffeensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:0.8
occ:1.00
ND2 A:ASN112 3.3 75.1 1.0
CA A:MET109 3.5 55.5 1.0
O B:ASP144 3.6 79.1 1.0
CB A:MET109 3.7 57.0 1.0
N A:MET109 4.0 62.5 1.0
CB B:ASP144 4.1 68.4 1.0
CG A:MET109 4.1 79.8 1.0
O A:HOH317 4.1 63.4 1.0
CA B:ASP144 4.1 69.2 1.0
OD1 B:ASP144 4.2 77.9 1.0
CG B:ASP144 4.2 76.3 1.0
C B:ASP144 4.3 77.0 1.0
CG A:ASN112 4.4 65.8 1.0
C A:ASP108 4.5 74.1 1.0
O A:ASP108 4.6 70.0 1.0
CB A:ASN112 4.8 58.7 1.0
C A:MET109 4.8 61.3 1.0
OD2 B:ASP144 4.9 70.6 1.0
CE A:MET109 4.9 84.5 1.0

Chlorine binding site 3 out of 4 in 6vud

Go back to Chlorine Binding Sites List in 6vud
Chlorine binding site 3 out of 4 in the Crystal Structure of A Ribosome Recycling Factor From Ehrlichia Chaffeensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Ribosome Recycling Factor From Ehrlichia Chaffeensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:0.2
occ:0.50
OG1 A:THR101 3.7 56.4 1.0
CA A:PRO103 4.2 66.0 1.0
N A:GLY90 4.2 56.2 1.0
O A:THR101 4.3 61.8 1.0
CA A:GLY90 4.5 51.0 1.0
N A:PRO103 4.5 67.0 1.0
CB A:PRO103 4.6 71.7 1.0
CB A:THR101 4.7 54.2 1.0
O A:VAL102 4.7 61.2 1.0
C A:VAL102 4.8 66.5 1.0
C A:THR101 4.8 61.1 1.0
CD A:PRO103 4.9 55.0 1.0
O A:GLY88 4.9 54.4 1.0

Chlorine binding site 4 out of 4 in 6vud

Go back to Chlorine Binding Sites List in 6vud
Chlorine binding site 4 out of 4 in the Crystal Structure of A Ribosome Recycling Factor From Ehrlichia Chaffeensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Ribosome Recycling Factor From Ehrlichia Chaffeensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:0.2
occ:1.00
OD1 B:ASP137 3.7 65.2 1.0
CG B:LYS140 4.2 58.5 1.0
CB B:LYS140 4.3 51.7 1.0
NZ A:LYS119 4.4 87.8 1.0
CD2 A:LEU116 4.6 52.7 1.0
O B:MET136 4.7 51.1 1.0
CD B:LYS140 4.9 65.7 1.0
CG B:ASP137 4.9 60.6 1.0
CA B:ASP137 5.0 48.0 1.0
C B:MET136 5.0 54.4 1.0

Reference:

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), J.Abendroth, P.S.Horanyi, D.D.Lorimer, T.E.Edwards. Crystal Structure of A Ribosome Recycling Factor From Ehrlichia Chaffeensis To Be Published.
Page generated: Mon Jul 29 16:30:17 2024

Last articles

Cl in 4MA8
Cl in 4M9J
Cl in 4M9T
Cl in 4M9U
Cl in 4M89
Cl in 4M8L
Cl in 4M9H
Cl in 4M9G
Cl in 4M8R
Cl in 4M8O
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy