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Chlorine in PDB 6vv3: Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT1358

Protein crystallography data

The structure of Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT1358, PDB code: 6vv3 was solved by A.Punetha, C.Hou, H.X.Ngo, S.Garneau-Tsodikova, O.V.Tsodikov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.40
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 175.353, 175.353, 125.155, 90.00, 90.00, 120.00
R / Rfree (%) 18.5 / 22.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT1358 (pdb code 6vv3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT1358, PDB code: 6vv3:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6vv3

Go back to Chlorine Binding Sites List in 6vv3
Chlorine binding site 1 out of 2 in the Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT1358


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT1358 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl506

b:59.0
occ:1.00
O A:HOH701 3.5 40.2 1.0
CG1 A:VAL40 4.0 28.9 1.0
O A:PRO41 4.1 32.5 1.0
CZ2 A:TRP13 4.1 43.9 1.0
O A:HOH725 4.3 52.3 1.0
O A:VAL40 4.6 32.8 1.0
NE1 A:TRP13 4.6 43.7 1.0
NH1 A:ARG37 4.6 53.0 1.0
CB A:VAL40 4.6 29.8 1.0
CE2 A:TRP13 4.7 42.8 1.0
C A:PRO41 4.8 33.9 1.0
CB A:ALA45 4.9 32.5 1.0

Chlorine binding site 2 out of 2 in 6vv3

Go back to Chlorine Binding Sites List in 6vv3
Chlorine binding site 2 out of 2 in the Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT1358


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT1358 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl507

b:44.5
occ:1.00
O A:HOH832 2.8 52.8 1.0
O A:HOH758 3.8 40.7 1.0
O A:HOH706 4.3 44.5 1.0
CA A:PHE400 4.5 37.6 1.0
O A:ALA399 4.5 49.2 1.0
CD2 A:LEU137 4.6 29.4 1.0
CG2 A:THR398 4.6 35.3 1.0
O A:THR398 4.7 34.7 1.0
N A:GLU401 4.7 38.3 1.0
N A:PHE400 4.8 39.0 1.0
C A:ALA399 4.8 42.8 1.0
C A:PHE400 5.0 37.8 1.0
CB A:THR398 5.0 35.2 1.0

Reference:

A.Punetha, H.X.Ngo, S.Y.L.Holbrook, K.D.Green, M.J.Willby, S.A.Bonnett, K.Krieger, E.K.Dennis, J.E.Posey, T.Parish, O.V.Tsodikov, S.Garneau-Tsodikova. Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis Frommycobacterium Tuberculosis. Acs Chem.Biol. 2020.
ISSN: ESSN 1554-8937
PubMed: 32421305
DOI: 10.1021/ACSCHEMBIO.0C00184
Page generated: Mon Jul 29 16:30:35 2024

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