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Chlorine in PDB 6wy7: Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-41 A.K.A 7-[1-Phenyl-3-({4-Phenylbicyclo[2.2.2]Octan-1- Yl}Amino)Propyl]-3H-[1,2,3]Triazolo[4,5-B]Pyridin-5-Amine

Enzymatic activity of Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-41 A.K.A 7-[1-Phenyl-3-({4-Phenylbicyclo[2.2.2]Octan-1- Yl}Amino)Propyl]-3H-[1,2,3]Triazolo[4,5-B]Pyridin-5-Amine

All present enzymatic activity of Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-41 A.K.A 7-[1-Phenyl-3-({4-Phenylbicyclo[2.2.2]Octan-1- Yl}Amino)Propyl]-3H-[1,2,3]Triazolo[4,5-B]Pyridin-5-Amine:
1.11.2.2;

Protein crystallography data

The structure of Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-41 A.K.A 7-[1-Phenyl-3-({4-Phenylbicyclo[2.2.2]Octan-1- Yl}Amino)Propyl]-3H-[1,2,3]Triazolo[4,5-B]Pyridin-5-Amine, PDB code: 6wy7 was solved by J.A.Khan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.96 / 2.09
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 104.998, 104.998, 223.998, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 18.5

Other elements in 6wy7:

The structure of Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-41 A.K.A 7-[1-Phenyl-3-({4-Phenylbicyclo[2.2.2]Octan-1- Yl}Amino)Propyl]-3H-[1,2,3]Triazolo[4,5-B]Pyridin-5-Amine also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-41 A.K.A 7-[1-Phenyl-3-({4-Phenylbicyclo[2.2.2]Octan-1- Yl}Amino)Propyl]-3H-[1,2,3]Triazolo[4,5-B]Pyridin-5-Amine (pdb code 6wy7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-41 A.K.A 7-[1-Phenyl-3-({4-Phenylbicyclo[2.2.2]Octan-1- Yl}Amino)Propyl]-3H-[1,2,3]Triazolo[4,5-B]Pyridin-5-Amine, PDB code: 6wy7:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6wy7

Go back to Chlorine Binding Sites List in 6wy7
Chlorine binding site 1 out of 3 in the Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-41 A.K.A 7-[1-Phenyl-3-({4-Phenylbicyclo[2.2.2]Octan-1- Yl}Amino)Propyl]-3H-[1,2,3]Triazolo[4,5-B]Pyridin-5-Amine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-41 A.K.A 7-[1-Phenyl-3-({4-Phenylbicyclo[2.2.2]Octan-1- Yl}Amino)Propyl]-3H-[1,2,3]Triazolo[4,5-B]Pyridin-5-Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:16.3
occ:1.00
O A:HOH331 3.1 17.5 1.0
N B:VAL327 3.2 14.4 1.0
N A:TRP32 3.2 16.8 1.0
CB B:ASN326 3.6 16.2 1.0
CA A:ARG31 3.6 18.9 1.0
N B:ASN326 3.7 15.2 1.0
CH2 B:TRP436 3.7 14.2 1.0
CB B:VAL327 3.8 14.1 1.0
CG1 B:VAL327 3.8 14.1 1.0
C A:ARG31 3.9 18.3 1.0
CA B:ASN326 3.9 15.1 1.0
C B:ASN326 4.0 15.4 1.0
CZ2 B:TRP436 4.0 14.2 1.0
CA B:VAL327 4.0 14.1 1.0
CG A:ARG31 4.1 23.2 1.0
CB A:ARG31 4.1 20.6 1.0
O A:VAL30 4.1 19.5 1.0
CA A:TRP32 4.2 17.2 1.0
CD2 B:LEU430 4.2 18.4 1.0
N A:LEU33 4.3 16.6 1.0
CB A:TRP32 4.4 17.9 1.0
CB B:ALA325 4.4 15.5 1.0
C B:ALA325 4.4 15.8 1.0
O A:LEU33 4.6 18.5 1.0
N A:ARG31 4.7 18.6 1.0
C A:TRP32 4.8 16.9 1.0
NH1 A:ARG31 4.8 14.5 1.0
CG B:ASN326 4.8 18.9 1.0
CA B:ALA325 4.8 15.5 1.0
CD A:ARG31 4.8 23.4 1.0
CZ3 B:TRP436 4.8 13.9 1.0
C A:VAL30 4.9 18.7 1.0
CG A:TRP32 4.9 19.2 1.0

Chlorine binding site 2 out of 3 in 6wy7

Go back to Chlorine Binding Sites List in 6wy7
Chlorine binding site 2 out of 3 in the Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-41 A.K.A 7-[1-Phenyl-3-({4-Phenylbicyclo[2.2.2]Octan-1- Yl}Amino)Propyl]-3H-[1,2,3]Triazolo[4,5-B]Pyridin-5-Amine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-41 A.K.A 7-[1-Phenyl-3-({4-Phenylbicyclo[2.2.2]Octan-1- Yl}Amino)Propyl]-3H-[1,2,3]Triazolo[4,5-B]Pyridin-5-Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl611

b:42.4
occ:1.00
N B:PHE213 3.8 23.3 1.0
N B:GLN201 3.8 26.4 1.0
O B:HOH972 4.1 47.3 1.0
OD1 B:ASN200 4.2 25.9 1.0
CD2 B:PHE213 4.3 24.7 1.0
CG B:ASN200 4.4 25.7 1.0
CB B:PHE213 4.4 23.8 1.0
CA B:ASN200 4.4 24.1 1.0
CA B:PRO212 4.4 23.3 1.0
ND2 B:ASN200 4.5 25.2 1.0
CB B:PRO212 4.6 24.1 1.0
CB B:GLN201 4.6 28.1 1.0
C B:ASN200 4.6 25.7 1.0
C B:PRO212 4.6 23.3 1.0
CA B:PHE213 4.7 24.3 1.0
CG B:PHE213 4.7 23.9 1.0
CD B:ARG202 4.7 37.2 1.0
CA B:GLN201 4.7 27.2 1.0
CG B:GLN201 4.7 29.5 1.0
O B:PHE213 4.8 25.5 1.0
N B:ARG202 4.9 28.2 1.0
CG B:ARG202 4.9 33.8 1.0
CB B:ASN200 5.0 24.1 1.0

Chlorine binding site 3 out of 3 in 6wy7

Go back to Chlorine Binding Sites List in 6wy7
Chlorine binding site 3 out of 3 in the Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-41 A.K.A 7-[1-Phenyl-3-({4-Phenylbicyclo[2.2.2]Octan-1- Yl}Amino)Propyl]-3H-[1,2,3]Triazolo[4,5-B]Pyridin-5-Amine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-41 A.K.A 7-[1-Phenyl-3-({4-Phenylbicyclo[2.2.2]Octan-1- Yl}Amino)Propyl]-3H-[1,2,3]Triazolo[4,5-B]Pyridin-5-Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl609

b:35.2
occ:1.00
N E:GLN201 3.7 26.3 1.0
N E:PHE213 3.7 22.4 1.0
O E:HOH761 4.1 41.5 1.0
OD1 E:ASN200 4.2 25.6 1.0
CA E:ASN200 4.3 24.4 1.0
CG E:ASN200 4.3 24.9 1.0
CD2 E:PHE213 4.3 21.9 1.0
CA E:PRO212 4.4 22.0 1.0
CB E:PHE213 4.4 22.4 1.0
ND2 E:ASN200 4.4 23.7 1.0
CB E:GLN201 4.5 30.0 1.0
CB E:PRO212 4.5 22.8 1.0
C E:ASN200 4.5 25.4 1.0
C E:PRO212 4.6 22.0 1.0
CA E:PHE213 4.6 23.2 1.0
CA E:GLN201 4.6 27.5 1.0
CG E:PHE213 4.7 21.9 1.0
CG E:GLN201 4.7 33.7 1.0
O E:PHE213 4.7 25.6 1.0
CD E:ARG202 4.8 34.8 1.0
N E:ARG202 4.8 26.3 1.0
CB E:ASN200 4.9 24.4 1.0
CG E:ARG202 4.9 31.5 1.0

Reference:

S.A.Shaw, B.P.Vokits, A.K.Dilger, A.Viet, C.G.Clark, L.M.Abell, G.A.Locke, G.Duke, L.M.Kopcho, A.Dongre, J.Gao, A.Krishnakumar, S.Jusuf, J.Khan, S.A.Spronk, M.D.Basso, L.Zhao, G.H.Cantor, J.M.Onorato, R.R.Wexler, F.Duclos, E.K.Kick. Discovery and Structure Activity Relationships of 7-Benzyl Triazolopyridines As Stable, Selective, and Reversible Inhibitors of Myeloperoxidase. Bioorg.Med.Chem. V. 28 15723 2020.
ISSN: ESSN 1464-3391
PubMed: 33007547
DOI: 10.1016/J.BMC.2020.115723
Page generated: Sat Jul 12 21:26:54 2025

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