Chlorine in PDB 6xq5: Receptor For Advanced Glycation End Products VC1 Domain in Complex with Fragment 1

The structure of Receptor For Advanced Glycation End Products VC1 Domain in Complex with Fragment 1, PDB code: 6xq5 was solved by L.E.Salay, N.Kozlyuk, B.A.Gilston, R.D.Gogliotti, P.P.Christov, K.Kim, M.Ovee, A.G.Waterson, W.J.Chazin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.50 / 1.80
Space group	P 62
Cell size a, b, c (Å), α, β, γ (°)	101.735, 101.735, 101.812, 90, 90, 120
R / Rfree (%)	17.3 / 19.6

The binding sites of Chlorine atom in the Receptor For Advanced Glycation End Products VC1 Domain in Complex with Fragment 1 (pdb code 6xq5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Receptor For Advanced Glycation End Products VC1 Domain in Complex with Fragment 1, PDB code: 6xq5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Receptor For Advanced Glycation End Products VC1 Domain in Complex with Fragment 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Receptor For Advanced Glycation End Products VC1 Domain in Complex with Fragment 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl305 b:20.2 occ:1.00 O A:HOH488 3.1 24.1 1.0 N A:GLU59 3.2 14.3 1.0 CA A:THR58 3.7 10.6 1.0 CB A:THR58 3.9 13.8 1.0 O A:GLU59 4.0 18.4 1.0 C A:THR58 4.0 15.5 1.0 CA A:GLU59 4.2 17.4 1.0 CB A:GLU59 4.2 19.5 1.0 CB A:LYS62 4.3 18.2 1.0 C A:GLU59 4.4 14.2 1.0 CG2 A:THR58 4.5 13.8 1.0 CD A:LYS62 4.6 23.1 1.0 O A:ARG57 4.8 22.1 1.0 CG A:LYS62 4.9 19.0 1.0 O A:HOH490 4.9 36.7 1.0 CA A:LYS62 5.0 14.2 1.0 O A:TRP61 5.0 19.3 1.0

Chlorine binding site 2 out of 2 in the Receptor For Advanced Glycation End Products VC1 Domain in Complex with Fragment 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Receptor For Advanced Glycation End Products VC1 Domain in Complex with Fragment 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl304 b:19.8 occ:1.00 O B:HOH494 3.1 23.9 1.0 N B:GLU59 3.2 15.2 1.0 CA B:THR58 3.7 11.2 1.0 CB B:THR58 3.9 13.9 1.0 C B:THR58 4.0 15.6 1.0 O B:GLU59 4.0 19.1 1.0 CA B:GLU59 4.2 17.8 1.0 CB B:GLU59 4.2 20.2 1.0 CB B:LYS62 4.4 17.0 1.0 C B:GLU59 4.4 13.9 1.0 CG2 B:THR58 4.5 13.5 1.0 CD B:LYS62 4.6 22.8 1.0 O B:ARG57 4.8 22.7 1.0 O B:HOH441 4.9 35.3 1.0 CG B:LYS62 5.0 18.8 1.0 O B:TRP61 5.0 19.9 1.0 CA B:LYS62 5.0 13.2 1.0

N.Kozlyuk, B.A.Gilston, L.E.Salay, R.D.Gogliotti, P.P.Christov, K.Kim, M.Ovee, A.G.Waterson, W.J.Chazin. A Fragment-Based Approach to Discovery of Rage Inhibitors To Be Published.