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Chlorine in PDB 6xtr: Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1C Complex

Enzymatic activity of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1C Complex

All present enzymatic activity of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1C Complex:
1.8.3.7;

Protein crystallography data

The structure of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1C Complex, PDB code: 6xtr was solved by F.Leisinger, F.P.Seebeck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.19 / 1.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.97, 71.674, 76.435, 90, 90, 90
R / Rfree (%) 18.9 / 20.6

Other elements in 6xtr:

The structure of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1C Complex also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Copper (Cu) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1C Complex (pdb code 6xtr). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1C Complex, PDB code: 6xtr:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6xtr

Go back to Chlorine Binding Sites List in 6xtr
Chlorine binding site 1 out of 2 in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1C Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1C Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:25.2
occ:1.00
 NE2 A:HIS270 3.2 19.2 1.0
N A:GLY192 3.2 15.8 1.0
CA A:GLN191 3.6 14.8 1.0
CB A:GLN191 3.8 15.3 1.0
C A:GLN191 4.0 15.9 1.0
O A:HOH564 4.0 17.9 1.0
CD2 A:HIS270 4.1 18.1 1.0
CE1 A:HIS270 4.1 22.1 1.0
CG A:GLN191 4.2 15.1 1.0
O A:GLY192 4.2 21.9 1.0
CA A:GLY192 4.3 14.7 1.0
O A:TRP190 4.7 15.3 1.0
C A:GLY192 4.7 14.5 1.0
N A:GLN191 4.9 13.5 1.0

Chlorine binding site 2 out of 2 in 6xtr

Go back to Chlorine Binding Sites List in 6xtr
Chlorine binding site 2 out of 2 in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1C Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1C Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:35.6
occ:1.00
 O A:HOH556 3.0 27.4 1.0
N A:LEU179 3.1 17.2 1.0
O A:HOH721 3.2 27.9 1.0
CA A:GLU178 3.7 19.4 1.0
CB A:LEU179 3.9 19.1 1.0
C A:GLU178 3.9 18.8 1.0
CA A:LEU179 4.1 18.3 1.0
O A:ASN177 4.2 21.7 1.0
CB A:GLU178 4.3 23.4 1.0
CG A:GLU178 4.8 32.6 1.0
N A:GLU178 4.8 17.4 1.0
CE2 A:TYR173 4.9 17.9 1.0
N A:THR180 5.0 21.2 1.0
OH A:TYR173 5.0 19.8 1.0

Reference:

F.Leisinger, D.A.Miarzlou, F.P.Seebeck. Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme To Be Published.
Page generated: Sat Jul 12 21:47:40 2025

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