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Chlorine in PDB 6y3w: Ternary Complex of 14-3-3 Sigma (C38N), Estrogen Related Receptor Gamma (Dbd) Phosphopeptide, and Disulfide Ppi Stabilizer 1

Protein crystallography data

The structure of Ternary Complex of 14-3-3 Sigma (C38N), Estrogen Related Receptor Gamma (Dbd) Phosphopeptide, and Disulfide Ppi Stabilizer 1, PDB code: 6y3w was solved by B.A.Somsen, C.Ottmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.65 / 1.34
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 82.532, 112.487, 62.731, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 18.7

Other elements in 6y3w:

The structure of Ternary Complex of 14-3-3 Sigma (C38N), Estrogen Related Receptor Gamma (Dbd) Phosphopeptide, and Disulfide Ppi Stabilizer 1 also contains other interesting chemical elements:

Fluorine (F) 1 atom
Magnesium (Mg) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ternary Complex of 14-3-3 Sigma (C38N), Estrogen Related Receptor Gamma (Dbd) Phosphopeptide, and Disulfide Ppi Stabilizer 1 (pdb code 6y3w). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Ternary Complex of 14-3-3 Sigma (C38N), Estrogen Related Receptor Gamma (Dbd) Phosphopeptide, and Disulfide Ppi Stabilizer 1, PDB code: 6y3w:

Chlorine binding site 1 out of 1 in 6y3w

Go back to Chlorine Binding Sites List in 6y3w
Chlorine binding site 1 out of 1 in the Ternary Complex of 14-3-3 Sigma (C38N), Estrogen Related Receptor Gamma (Dbd) Phosphopeptide, and Disulfide Ppi Stabilizer 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ternary Complex of 14-3-3 Sigma (C38N), Estrogen Related Receptor Gamma (Dbd) Phosphopeptide, and Disulfide Ppi Stabilizer 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:16.4
occ:1.00
O A:HOH692 3.0 25.0 1.0
O A:HOH646 3.1 22.4 1.0
HA A:TYR84 3.1 14.4 1.0
HD2 A:LYS87 3.1 24.8 1.0
HD1 A:TYR84 3.2 14.9 1.0
HB2 A:LYS87 3.4 17.9 1.0
HB3 A:GLU83 3.6 15.9 1.0
HB2 A:TYR84 3.8 14.7 1.0
CA A:TYR84 3.8 12.0 1.0
O A:GLU83 3.9 12.2 1.0
CD A:LYS87 3.9 20.6 1.0
HB3 A:LYS87 3.9 17.9 1.0
N A:TYR84 4.0 11.6 1.0
C A:GLU83 4.0 11.5 1.0
CB A:LYS87 4.1 14.9 1.0
HD3 A:LYS87 4.1 24.8 1.0
CD1 A:TYR84 4.1 12.4 1.0
CB A:TYR84 4.2 12.2 1.0
CB A:GLU83 4.3 13.2 1.0
HB2 A:GLU83 4.4 15.9 1.0
H A:TYR84 4.5 13.9 1.0
HZ1 A:LYS87 4.5 46.7 1.0
CG A:LYS87 4.5 16.2 1.0
O A:HOH461 4.5 19.3 1.0
CG A:TYR84 4.6 11.5 1.0
HG3 A:LYS87 4.7 19.4 1.0
O A:HOH743 4.8 36.5 1.0
CA A:GLU83 4.9 12.2 1.0
HZ2 A:LYS87 4.9 46.7 1.0
H A:LYS87 4.9 15.2 1.0

Reference:

E.Sijbesma, B.A.Somsen, G.P.Miley, I.A.Leijten-Van De Gevel, L.Brunsveld, M.R.Arkin, C.Ottmann. Fluorescence Anisotropy-Based Tethering For Discovery of Protein-Protein Interaction Stabilizers. Acs Chem.Biol. 2020.
ISSN: ESSN 1554-8937
PubMed: 33196173
DOI: 10.1021/ACSCHEMBIO.0C00646
Page generated: Sat Jul 12 21:53:14 2025

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