Chlorine in PDB 6ynp: Crystal Structure of YTHDC1 with Compound T96C1

The structure of Crystal Structure of YTHDC1 with Compound T96C1, PDB code: 6ynp was solved by R.K.Bedi, D.Huang, L.Wiedmer, A.Caflisch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.76 / 1.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	39.620, 103.290, 42.300, 90.00, 105.49, 90.00
R / Rfree (%)	19.1 / 19.8

The binding sites of Chlorine atom in the Crystal Structure of YTHDC1 with Compound T96C1 (pdb code 6ynp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of YTHDC1 with Compound T96C1, PDB code: 6ynp:

Chlorine binding site 1 out of 1 in the Crystal Structure of YTHDC1 with Compound T96C1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of YTHDC1 with Compound T96C1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl605 b:17.9 occ:1.00 O B:HOH873 2.7 17.0 1.0 OE2 B:GLU479 2.8 9.8 1.0 O B:ILE480 2.8 9.7 1.0 N B:PHE357 2.9 8.2 1.0 CA B:ARG356 3.2 9.6 1.0 CG B:GLU479 3.4 9.2 1.0 CB B:ARG356 3.5 9.0 1.0 CD B:GLU479 3.5 8.9 1.0 C B:ARG356 3.6 9.0 1.0 CZ3 B:TRP465 3.7 13.0 1.0 O B:PHE357 3.8 8.3 1.0 CG B:ARG356 3.8 9.9 1.0 C B:ILE480 3.8 9.2 1.0 CA B:PHE357 4.0 8.3 1.0 CD1 B:PHE357 4.1 10.0 1.0 O B:ALA355 4.3 11.6 1.0 CB B:PHE357 4.3 9.0 1.0 CH2 B:TRP465 4.3 13.7 1.0 C B:PHE357 4.4 8.6 1.0 N B:ARG356 4.4 9.0 1.0 N B:ILE480 4.4 8.9 1.0 N B:LEU482 4.5 10.4 1.0 CE3 B:TRP465 4.5 11.0 1.0 CA B:GLU481 4.5 10.1 1.0 C B:GLU481 4.6 10.0 1.0 N B:GLU481 4.6 9.8 1.0 NE B:ARG356 4.7 9.8 1.0 CG B:PHE357 4.7 8.9 1.0 OE1 B:GLU479 4.8 10.7 1.0 C B:ALA355 4.8 10.4 1.0 CA B:ILE480 4.8 9.1 1.0 O B:ARG356 4.8 9.4 1.0 CD B:ARG356 4.9 9.2 1.0 CB B:GLU479 4.9 9.8 1.0

R.K.Bedi, D.Huang, L.Wiedmer, A.Caflisch. Crystal Structure of YTHDC1 with Compound T96C1 To Be Published.