Atomistry » Chlorine » PDB 6ynp-6yyc » 6yu9
Atomistry »
  Chlorine »
    PDB 6ynp-6yyc »
      6yu9 »

Chlorine in PDB 6yu9: Co-Dehydrogenase Homodimer From Clostridium Autoethanogenum at 1.90-A Resolution

Enzymatic activity of Co-Dehydrogenase Homodimer From Clostridium Autoethanogenum at 1.90-A Resolution

All present enzymatic activity of Co-Dehydrogenase Homodimer From Clostridium Autoethanogenum at 1.90-A Resolution:
1.2.99.2;

Protein crystallography data

The structure of Co-Dehydrogenase Homodimer From Clostridium Autoethanogenum at 1.90-A Resolution, PDB code: 6yu9 was solved by T.Wagner, O.N.Lemaire, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.75 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 106.531, 109.446, 129.280, 90.00, 112.55, 90.00
R / Rfree (%) 15.8 / 20.3

Other elements in 6yu9:

The structure of Co-Dehydrogenase Homodimer From Clostridium Autoethanogenum at 1.90-A Resolution also contains other interesting chemical elements:

Nickel (Ni) 4 atoms
Iron (Fe) 40 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Co-Dehydrogenase Homodimer From Clostridium Autoethanogenum at 1.90-A Resolution (pdb code 6yu9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Co-Dehydrogenase Homodimer From Clostridium Autoethanogenum at 1.90-A Resolution, PDB code: 6yu9:

Chlorine binding site 1 out of 1 in 6yu9

Go back to Chlorine Binding Sites List in 6yu9
Chlorine binding site 1 out of 1 in the Co-Dehydrogenase Homodimer From Clostridium Autoethanogenum at 1.90-A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Co-Dehydrogenase Homodimer From Clostridium Autoethanogenum at 1.90-A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl704

b:63.4
occ:1.00
O C:HOH935 3.0 43.9 1.0
NZ C:LYS628 3.1 67.4 1.0
CB C:GLU624 3.4 44.9 1.0
OE2 C:GLU624 3.4 84.6 1.0
NH1 C:ARG621 3.6 24.5 1.0
CG C:LYS625 4.0 40.9 1.0
CZ C:ARG621 4.0 31.8 1.0
CD C:ARG621 4.1 27.7 1.0
N C:LYS625 4.1 40.1 1.0
C C:GLU624 4.2 39.4 1.0
NE C:ARG621 4.2 27.5 1.0
CD C:GLU624 4.3 77.9 1.0
CE C:LYS628 4.3 64.0 1.0
CG C:GLU624 4.3 59.3 1.0
CA C:GLU624 4.5 38.6 1.0
O C:ARG621 4.6 27.5 1.0
CA C:LYS625 4.6 39.3 1.0
O C:GLU624 4.6 40.3 1.0
CE C:LYS625 4.6 47.0 1.0
NH2 C:ARG621 4.9 36.1 1.0
O C:HOH828 4.9 23.5 1.0
CB C:LYS625 4.9 38.9 1.0
CD C:LYS625 5.0 43.2 1.0
OE2 C:GLU598 5.0 45.0 1.0

Reference:

O.N.Lemaire, T.Wagner. Gas Channel Rerouting in A Primordial Enzyme: Structural Insights of the Carbon-Monoxide Dehydrogenase/Acetyl-Coa Synthase Complex From the Acetogen Clostridium Autoethanogenum. Biochim Biophys Acta V.1862 48330 2020BIOENERG.
ISSN: ISSN 1879-2650
PubMed: 33080205
DOI: 10.1016/J.BBABIO.2020.148330
Page generated: Sat Jul 12 22:12:24 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy