Atomistry » Chlorine » PDB 6yyc-6zbo » 6z20
Atomistry »
  Chlorine »
    PDB 6yyc-6zbo »
      6z20 »

Chlorine in PDB 6z20: Structure of the EC2 Domain of CD9 in Complex with Nanobody 4C8

Protein crystallography data

The structure of Structure of the EC2 Domain of CD9 in Complex with Nanobody 4C8, PDB code: 6z20 was solved by W.Oosterheert, J.Manshande, N.M.Pearce, M.Lutz, P.Gros, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.71 / 2.68
Space group I 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 75.645, 121.415, 129.249, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 24.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the EC2 Domain of CD9 in Complex with Nanobody 4C8 (pdb code 6z20). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of the EC2 Domain of CD9 in Complex with Nanobody 4C8, PDB code: 6z20:

Chlorine binding site 1 out of 1 in 6z20

Go back to Chlorine Binding Sites List in 6z20
Chlorine binding site 1 out of 1 in the Structure of the EC2 Domain of CD9 in Complex with Nanobody 4C8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the EC2 Domain of CD9 in Complex with Nanobody 4C8 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl201

b:57.8
occ:1.00
H D:SER54 2.4 85.8 1.0
H D:LEU57 2.6 78.7 1.0
HA3 D:GLY52 2.8 72.2 1.0
H D:ASP56 2.9 83.3 1.0
HG D:LEU57 3.0 72.8 1.0
H D:TRP53 3.1 81.7 1.0
H D:GLY55 3.2 86.6 1.0
HB2 D:ASP56 3.2 96.0 1.0
HB2 D:SER54 3.2 84.9 1.0
N D:SER54 3.2 70.5 1.0
N D:TRP53 3.4 67.0 1.0
HE3 D:TRP53 3.4 67.9 1.0
N D:LEU57 3.4 64.6 1.0
HB2 D:LEU57 3.5 69.9 1.0
N D:ASP56 3.5 68.4 1.0
C D:GLY52 3.6 66.3 1.0
CA D:GLY52 3.6 59.2 1.0
HD11 D:LEU57 3.6 76.8 1.0
N D:GLY55 3.7 71.1 1.0
CG D:LEU57 3.8 59.6 1.0
CB D:SER54 3.9 69.7 1.0
CA D:SER54 3.9 71.0 1.0
CB D:LEU57 4.0 57.2 1.0
CB D:ASP56 4.0 79.0 1.0
CA D:ASP56 4.1 71.5 1.0
C D:SER54 4.1 71.5 1.0
C D:TRP53 4.1 71.2 1.0
HB2 D:TRP53 4.2 79.1 1.0
CD1 D:LEU57 4.2 63.0 1.0
H D:GLY52 4.2 67.9 1.0
CA D:TRP53 4.2 68.0 1.0
OG D:SER54 4.3 74.3 1.0
CE3 D:TRP53 4.3 55.5 1.0
C D:ASP56 4.3 69.7 1.0
HA2 D:GLY52 4.3 72.2 1.0
OD1 D:ASP56 4.3 90.3 1.0
CA D:LEU57 4.3 56.4 1.0
O D:GLY52 4.4 71.8 1.0
C D:GLY55 4.4 68.3 1.0
N D:GLY52 4.4 55.5 1.0
HD12 D:LEU57 4.5 76.8 1.0
CA D:GLY55 4.5 68.6 1.0
HG D:SER54 4.5 90.4 0.0
HG C:SER164 4.7 83.4 0.0
CG D:ASP56 4.7 87.6 1.0
HB3 D:ASP56 4.7 96.0 1.0
CB D:TRP53 4.7 64.8 1.0
HB3 D:SER54 4.7 84.9 1.0
HA2 D:GLY55 4.8 83.6 1.0
HA D:SER54 4.8 86.5 1.0
HZ3 D:TRP53 4.8 62.6 1.0
HB3 D:LEU57 4.9 69.9 1.0
O D:LEU57 4.9 56.8 1.0

Reference:

W.Oosterheert, K.T.Xenaki, V.Neviani, W.Pos, S.Doulkeridou, J.Manshande, N.M.Pearce, L.M.Kroon-Batenburg, M.Lutz, P.M.Van Bergen En Henegouwen, P.Gros. Implications For Tetraspanin-Enriched Microdomain Assembly Based on Structures of CD9 with Ewi-F. Life Sci Alliance V. 3 2020.
ISSN: ESSN 2575-1077
PubMed: 32958604
DOI: 10.26508/LSA.202000883
Page generated: Mon Jul 29 17:55:13 2024

Last articles

Cl in 4F4V
Cl in 4F4T
Cl in 4F4D
Cl in 4F4R
Cl in 4F3Y
Cl in 4F2W
Cl in 4F40
Cl in 4F3I
Cl in 4F2F
Cl in 4F2A
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy