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Chlorine in PDB 7bir: Inhibitor of MDM2-P53 Interaction

Enzymatic activity of Inhibitor of MDM2-P53 Interaction

All present enzymatic activity of Inhibitor of MDM2-P53 Interaction:
2.3.2.27;

Protein crystallography data

The structure of Inhibitor of MDM2-P53 Interaction, PDB code: 7bir was solved by P.A.Williams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.80 / 2.02
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 71.459, 71.459, 101.201, 90, 90, 120
R / Rfree (%) 21.9 / 24.3

Other elements in 7bir:

The structure of Inhibitor of MDM2-P53 Interaction also contains other interesting chemical elements:

Fluorine (F) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Inhibitor of MDM2-P53 Interaction (pdb code 7bir). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Inhibitor of MDM2-P53 Interaction, PDB code: 7bir:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7bir

Go back to Chlorine Binding Sites List in 7bir
Chlorine binding site 1 out of 2 in the Inhibitor of MDM2-P53 Interaction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Inhibitor of MDM2-P53 Interaction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:40.3
occ:1.00
CL1 A:TUZ203 0.0 40.3 1.0
C15 A:TUZ203 1.8 37.8 1.0
C14 A:TUZ203 2.7 36.1 1.0
C17 A:TUZ203 2.7 37.3 1.0
H50 A:TUZ203 2.9 36.1 1.0
H51 A:TUZ203 2.9 37.3 1.0
CG A:HIS96 3.6 48.2 1.0
CD1 A:LEU54 3.7 35.4 1.0
CB A:HIS96 3.7 41.5 1.0
CE1 A:TYR100 3.8 41.6 1.0
CA A:HIS96 3.8 39.8 1.0
O A:HIS96 3.9 35.2 1.0
CD1 A:TYR100 3.9 37.7 1.0
ND1 A:HIS96 3.9 52.7 1.0
CD2 A:HIS96 4.0 51.2 1.0
CG2 A:ILE99 4.0 33.7 1.0
N18 A:TUZ203 4.0 38.7 1.0
C13 A:TUZ203 4.0 32.4 1.0
CB A:ILE99 4.2 35.5 1.0
CD1 A:ILE99 4.2 37.6 1.0
CG A:LEU54 4.3 39.9 1.0
C A:HIS96 4.4 38.2 1.0
CE1 A:HIS96 4.4 52.1 1.0
NE2 A:HIS96 4.4 52.2 1.0
C12 A:TUZ203 4.5 33.2 1.0
CG1 A:ILE99 4.8 36.3 1.0
H49 A:TUZ203 4.8 32.4 1.0
O A:HOH338 4.9 35.8 1.0

Chlorine binding site 2 out of 2 in 7bir

Go back to Chlorine Binding Sites List in 7bir
Chlorine binding site 2 out of 2 in the Inhibitor of MDM2-P53 Interaction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Inhibitor of MDM2-P53 Interaction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:35.0
occ:1.00
CL2 A:TUZ203 0.0 35.0 1.0
C35 A:TUZ203 1.7 34.9 1.0
C34 A:TUZ203 2.7 33.4 1.0
C37 A:TUZ203 2.7 33.4 1.0
H62 A:TUZ203 2.8 33.4 1.0
H63 A:TUZ203 2.9 33.4 1.0
CG2 A:ILE99 3.8 33.7 1.0
CD1 A:LEU54 3.9 35.4 1.0
CB A:LEU57 3.9 36.5 1.0
C33 A:TUZ203 4.0 33.3 1.0
C38 A:TUZ203 4.0 31.1 1.0
CD1 A:ILE61 4.0 41.6 1.0
CE2 A:PHE86 4.1 35.9 1.0
CZ A:PHE86 4.1 33.8 1.0
CD1 A:LEU57 4.1 37.0 1.0
CZ A:PHE91 4.1 33.8 1.0
CE2 A:PHE91 4.3 34.1 1.0
C32 A:TUZ203 4.5 30.3 1.0
CG A:LEU57 4.5 38.6 1.0
CD1 A:ILE103 4.6 41.5 1.0
H61 A:TUZ203 4.8 33.3 1.0
H64 A:TUZ203 4.8 31.1 1.0
CD2 A:LEU57 4.9 38.9 1.0

Reference:

G.Chessari, I.R.Hardcastle, J.S.Ahn, B.Anil, E.Anscombe, R.H.Bawn, L.D.Bevan, T.J.Blackburn, I.Buck, C.Cano, B.Carbain, J.Castro, B.Cons, S.J.Cully, J.A.Endicott, L.Fazal, B.T.Golding, R.J.Griffin, K.Haggerty, S.J.Harnor, K.Hearn, S.Hobson, R.S.Holvey, S.Howard, C.E.Jennings, C.N.Johnson, J.Lunec, D.C.Miller, D.R.Newell, M.E.M.Noble, J.Reeks, C.H.Revill, C.Riedinger, J.D.St Denis, E.Tamanini, H.Thomas, N.T.Thompson, M.Vinkovic, S.R.Wedge, P.A.Williams, N.E.Wilsher, B.Zhang, Y.Zhao. Structure-Based Design of Potent and Orally Active Isoindolinone Inhibitors of MDM2-P53 Protein-Protein Interaction. J.Med.Chem. 2021.
ISSN: ISSN 0022-2623
PubMed: 33761253
DOI: 10.1021/ACS.JMEDCHEM.0C02188
Page generated: Sat Jul 12 23:19:50 2025

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