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Chlorine in PDB 7cna: Crystal Structure of SPINDLIN1/C11ORF84 Complex Bound to Histone H3K4ME3K9ME3 Peptide

Protein crystallography data

The structure of Crystal Structure of SPINDLIN1/C11ORF84 Complex Bound to Histone H3K4ME3K9ME3 Peptide, PDB code: 7cna was solved by C.M.Qian, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.11 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.603, 101.184, 56.615, 90, 91.41, 90
R / Rfree (%) 17.2 / 20.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of SPINDLIN1/C11ORF84 Complex Bound to Histone H3K4ME3K9ME3 Peptide (pdb code 7cna). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of SPINDLIN1/C11ORF84 Complex Bound to Histone H3K4ME3K9ME3 Peptide, PDB code: 7cna:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7cna

Go back to Chlorine Binding Sites List in 7cna
Chlorine binding site 1 out of 3 in the Crystal Structure of SPINDLIN1/C11ORF84 Complex Bound to Histone H3K4ME3K9ME3 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of SPINDLIN1/C11ORF84 Complex Bound to Histone H3K4ME3K9ME3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:18.7
occ:1.00
NE2 A:HIS234 3.1 19.0 1.0
O A:HOH445 3.1 15.7 1.0
N A:GLU237 3.3 15.4 1.0
O A:HOH518 3.3 26.7 1.0
CB A:ALA157 3.9 13.2 1.0
CA A:VAL236 3.9 14.4 1.0
CB A:GLU237 3.9 21.9 1.0
CE1 A:HIS234 3.9 19.7 1.0
C A:VAL236 4.0 14.7 1.0
CD2 A:HIS234 4.1 17.5 1.0
CG1 A:VAL236 4.2 14.9 1.0
CA A:GLU237 4.2 17.2 1.0
O A:GLN235 4.4 14.7 1.0
CB A:VAL236 4.5 13.4 1.0
O A:HOH524 4.6 22.8 1.0
O A:LEU156 4.6 13.4 1.0
O A:HOH439 4.7 24.4 1.0
N A:VAL236 4.9 13.1 1.0
N A:ALA238 5.0 15.0 1.0
CG2 A:VAL236 5.0 14.3 1.0

Chlorine binding site 2 out of 3 in 7cna

Go back to Chlorine Binding Sites List in 7cna
Chlorine binding site 2 out of 3 in the Crystal Structure of SPINDLIN1/C11ORF84 Complex Bound to Histone H3K4ME3K9ME3 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of SPINDLIN1/C11ORF84 Complex Bound to Histone H3K4ME3K9ME3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl304

b:18.9
occ:1.00
NE2 D:HIS234 3.1 20.5 1.0
O D:HOH450 3.1 15.4 1.0
O D:HOH506 3.2 26.2 1.0
N D:GLU237 3.3 16.1 1.0
CA D:VAL236 3.8 14.2 1.0
CB D:ALA157 3.9 12.6 1.0
CB D:GLU237 3.9 19.4 1.0
CE1 D:HIS234 3.9 20.0 1.0
CG D:GLU237 4.0 24.9 1.0
C D:VAL236 4.0 14.8 1.0
CD2 D:HIS234 4.1 18.6 1.0
CG1 D:VAL236 4.2 15.1 1.0
CA D:GLU237 4.2 17.0 1.0
O D:GLN235 4.4 15.0 1.0
O D:HOH419 4.4 38.3 1.0
CB D:VAL236 4.5 14.1 1.0
O D:HOH453 4.6 22.9 1.0
O D:HOH512 4.6 23.7 1.0
O D:LEU156 4.7 12.8 1.0
N D:VAL236 4.9 13.8 1.0
CG2 D:VAL236 5.0 14.4 1.0

Chlorine binding site 3 out of 3 in 7cna

Go back to Chlorine Binding Sites List in 7cna
Chlorine binding site 3 out of 3 in the Crystal Structure of SPINDLIN1/C11ORF84 Complex Bound to Histone H3K4ME3K9ME3 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of SPINDLIN1/C11ORF84 Complex Bound to Histone H3K4ME3K9ME3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl302

b:15.4
occ:1.00
NH2 E:ARG263 3.3 15.3 1.0
O E:HOH404 3.4 16.0 1.0
NH1 E:ARG263 3.5 13.1 1.0
CZ E:ARG263 3.9 14.0 1.0
CE1 E:HIS264 3.9 16.4 1.0
ND1 E:HIS264 4.5 16.4 1.0
NE2 E:HIS264 4.9 16.7 1.0
O E:HOH406 5.0 21.0 1.0

Reference:

C.M.Qian, C.M.Qian. N/A N/A.
Page generated: Sat Jul 12 23:48:33 2025

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