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Chlorine in PDB 7cvj: Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms)

Enzymatic activity of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms)

All present enzymatic activity of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms):
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms), PDB code: 7cvj was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.18 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.450, 79.450, 38.450, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 18.5

Other elements in 7cvj:

The structure of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms) also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms) (pdb code 7cvj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms), PDB code: 7cvj:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7cvj

Go back to Chlorine Binding Sites List in 7cvj
Chlorine binding site 1 out of 2 in the Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:24.4
occ:1.00
HH A:TYR41 2.4 20.3 1.0
OH A:TYR41 3.0 16.9 1.0
HE2 A:TYR41 3.2 19.3 1.0
HA3 A:GLY122 3.4 21.4 1.0
O A:HOH345 3.4 25.7 1.0
CZ A:TYR41 3.7 15.1 1.0
CE2 A:TYR41 3.7 16.0 1.0
HA2 A:GLY122 4.1 21.4 1.0
CA A:GLY122 4.1 17.8 1.0
O A:ARG39 4.7 23.3 1.0
O A:HOH307 4.7 26.4 1.0
N A:GLY122 4.7 16.7 1.0
H A:MET123 4.8 16.4 1.0
CE1 A:TYR41 4.9 14.5 1.0
H A:GLY122 4.9 20.1 1.0
CD2 A:TYR41 5.0 15.5 1.0

Chlorine binding site 2 out of 2 in 7cvj

Go back to Chlorine Binding Sites List in 7cvj
Chlorine binding site 2 out of 2 in the Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Lysozyme By Fixed-Target Serial Synchrotron Crystallography (100 Ms) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:31.8
occ:1.00
H A:GLY44 2.3 18.4 1.0
HG A:SER42 2.8 29.1 1.0
HA A:GLN139 2.8 26.7 1.0
HB2 A:SER42 2.9 24.4 1.0
HA3 A:GLY44 2.9 18.9 1.0
OG A:SER42 3.1 24.2 1.0
N A:GLY44 3.1 15.3 1.0
HD11 A:ILE142 3.1 40.5 1.0
HG23 A:VAL138 3.4 26.1 1.0
CB A:SER42 3.5 20.3 1.0
CA A:GLY44 3.5 15.7 1.0
HB2 A:GLN139 3.5 37.9 1.0
HD13 A:ILE142 3.5 40.5 1.0
CA A:GLN139 3.6 22.2 1.0
HG2 A:GLN139 3.7 48.5 1.0
HG12 A:ILE142 3.7 29.5 1.0
CD1 A:ILE142 3.7 33.7 1.0
CB A:GLN139 3.9 31.5 1.0
H A:LEU43 4.0 21.3 1.0
N A:GLN139 4.0 23.3 1.0
N A:LEU43 4.1 17.7 1.0
HB3 A:SER42 4.1 24.4 1.0
HA2 A:GLY44 4.1 18.9 1.0
CG A:GLN139 4.2 40.4 1.0
C A:SER42 4.2 19.7 1.0
C A:LEU43 4.2 17.7 1.0
HB3 A:LEU43 4.3 23.4 1.0
CG1 A:ILE142 4.3 24.6 1.0
H A:ASN45 4.3 17.0 1.0
H A:GLN139 4.3 28.0 1.0
O A:VAL138 4.4 21.2 1.0
C A:VAL138 4.4 22.9 1.0
CG2 A:VAL138 4.4 21.8 1.0
HG3 A:GLN139 4.4 48.5 1.0
CA A:SER42 4.5 19.2 1.0
HD12 A:ILE142 4.6 40.5 1.0
C A:GLY44 4.6 16.1 1.0
CA A:LEU43 4.6 16.4 1.0
HG21 A:VAL138 4.7 26.1 1.0
O A:SER42 4.7 18.7 1.0
HG13 A:ILE142 4.7 29.5 1.0
N A:ASN45 4.7 14.1 1.0
C A:GLN139 4.9 20.7 1.0
HB3 A:GLN139 4.9 37.9 1.0
HG22 A:VAL138 4.9 26.1 1.0
HB A:VAL138 4.9 25.1 1.0
CB A:LEU43 5.0 19.5 1.0

Reference:

K.H.Nam, K.H.Nam. N/A N/A.
Page generated: Sat Jul 12 23:53:30 2025

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