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Chlorine in PDB 7dba: Ryx in Complex with Tubulin

Protein crystallography data

The structure of Ryx in Complex with Tubulin, PDB code: 7dba was solved by C.Y.Wu, Y.X.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.30 / 2.46
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 105.449, 158.876, 181.608, 90, 90, 90
R / Rfree (%) 18.8 / 22.8

Other elements in 7dba:

The structure of Ryx in Complex with Tubulin also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Magnesium (Mg) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ryx in Complex with Tubulin (pdb code 7dba). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Ryx in Complex with Tubulin, PDB code: 7dba:

Chlorine binding site 1 out of 1 in 7dba

Go back to Chlorine Binding Sites List in 7dba
Chlorine binding site 1 out of 1 in the Ryx in Complex with Tubulin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ryx in Complex with Tubulin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:79.2
occ:1.00
N A:LYS163 3.2 60.1 1.0
N A:GLY162 3.3 55.4 1.0
C A:TYR161 3.5 50.5 1.0
CA A:TYR161 3.7 51.0 1.0
CD A:LYS164 3.7 59.2 1.0
CB A:LYS163 3.9 74.0 1.0
CA A:LYS163 4.1 68.8 1.0
CA A:GLY162 4.1 53.6 1.0
C A:GLY162 4.2 64.1 1.0
CE A:LYS164 4.2 68.5 1.0
O A:TYR161 4.2 65.8 1.0
N A:LYS164 4.3 67.6 1.0
CB A:TYR161 4.5 38.5 1.0
NZ A:LYS164 4.5 75.0 1.0
C A:LYS163 4.5 71.2 1.0
O A:ASP160 4.6 47.2 1.0
CG A:LYS163 4.7 68.4 1.0
N A:TYR161 4.8 66.3 1.0
CG A:LYS164 4.9 54.5 1.0

Reference:

C.Y.Wu, Y.X.Wang. Ryx in Complex with Tubulin To Be Published.
Page generated: Sun Jul 13 00:00:05 2025

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