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Chlorine in PDB 7dft: Crystal Structure of Xanthomonas Oryzae Clpp

Enzymatic activity of Crystal Structure of Xanthomonas Oryzae Clpp

All present enzymatic activity of Crystal Structure of Xanthomonas Oryzae Clpp:
3.4.21.92;

Protein crystallography data

The structure of Crystal Structure of Xanthomonas Oryzae Clpp, PDB code: 7dft was solved by C.-G.Yang, T.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.64 / 1.80
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 132.548, 132.548, 187.4, 90, 90, 90
R / Rfree (%) 18.7 / 22.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Xanthomonas Oryzae Clpp (pdb code 7dft). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of Xanthomonas Oryzae Clpp, PDB code: 7dft:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 7dft

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Chlorine binding site 1 out of 8 in the Crystal Structure of Xanthomonas Oryzae Clpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Xanthomonas Oryzae Clpp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:16.6
occ:1.00
 NH2 A:ARG154 3.1 11.3 1.0
NE A:ARG154 3.3 10.6 1.0
CZ A:ARG154 3.6 16.4 1.0
CG2 A:ILE150 3.8 14.4 1.0
CD1 A:LEU133 3.9 14.1 1.0
CD A:ARG154 4.5 10.6 1.0
CB A:LEU133 4.8 10.3 1.0
CG A:LEU133 4.8 17.7 1.0
NH1 A:ARG154 4.9 11.1 1.0
CD1 A:ILE150 5.0 16.7 1.0

Chlorine binding site 2 out of 8 in 7dft

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Chlorine binding site 2 out of 8 in the Crystal Structure of Xanthomonas Oryzae Clpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Xanthomonas Oryzae Clpp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:18.4
occ:1.00
 O A:HOH508 2.7 29.3 1.0
N A:ALA147 3.2 10.1 1.0
ND1 A:HIS146 3.4 28.3 1.0
CA A:HIS146 3.7 14.1 1.0
CB A:HIS146 3.7 22.8 1.0
CB A:ALA147 3.9 13.3 1.0
C A:HIS146 4.0 16.2 1.0
CG A:HIS146 4.0 30.6 1.0
CA A:ALA147 4.2 11.2 1.0
O A:HOH502 4.3 15.8 1.0
CE1 A:HIS146 4.5 30.9 1.0
N A:HIS146 4.9 14.8 1.0

Chlorine binding site 3 out of 8 in 7dft

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Chlorine binding site 3 out of 8 in the Crystal Structure of Xanthomonas Oryzae Clpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Xanthomonas Oryzae Clpp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:25.8
occ:1.00
 OG A:SER155 3.3 32.1 1.0
ND2 A:ASN158 3.3 12.4 1.0
CA A:SER155 3.9 15.2 1.0
CB A:ASN158 3.9 10.5 1.0
CB A:SER155 4.0 24.8 1.0
CD1 A:LEU169 4.1 19.6 1.0
CB A:ALA173 4.1 13.9 1.0
CG A:ASN158 4.1 12.7 1.0
CG A:LEU169 4.3 15.9 1.0
CD2 A:LEU169 4.5 16.2 1.0
O A:SER155 4.6 10.6 1.0
C A:SER155 4.8 10.3 1.0
N A:SER155 4.8 9.6 1.0

Chlorine binding site 4 out of 8 in 7dft

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Chlorine binding site 4 out of 8 in the Crystal Structure of Xanthomonas Oryzae Clpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Xanthomonas Oryzae Clpp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:23.2
occ:1.00
 N B:ALA147 3.3 15.7 1.0
ND1 B:HIS146 3.3 36.7 1.0
CA B:HIS146 3.7 19.3 1.0
CB B:HIS146 3.7 25.8 1.0
CG B:HIS146 3.9 36.2 1.0
C B:HIS146 4.0 16.0 1.0
CB B:ALA147 4.1 17.5 1.0
CA B:ALA147 4.3 19.6 1.0
O B:HOH484 4.4 22.7 1.0
CE1 B:HIS146 4.5 36.9 1.0
N B:HIS146 5.0 13.8 1.0

Chlorine binding site 5 out of 8 in 7dft

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Chlorine binding site 5 out of 8 in the Crystal Structure of Xanthomonas Oryzae Clpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Xanthomonas Oryzae Clpp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl301

b:18.6
occ:1.00
 NH2 C:ARG154 3.2 11.1 1.0
NE C:ARG154 3.4 9.6 1.0
CZ C:ARG154 3.7 14.9 1.0
CG2 C:ILE150 3.8 9.7 1.0
CD1 C:LEU133 3.8 13.2 1.0
CD C:ARG154 4.5 9.5 1.0
CG C:LEU133 4.8 16.5 1.0
CB C:LEU133 4.8 11.8 1.0
CD1 C:ILE150 4.9 11.5 1.0
CB C:ILE150 5.0 10.9 1.0
NH1 C:ARG154 5.0 10.4 1.0

Chlorine binding site 6 out of 8 in 7dft

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Chlorine binding site 6 out of 8 in the Crystal Structure of Xanthomonas Oryzae Clpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Xanthomonas Oryzae Clpp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl301

b:53.2
occ:1.00
 NH2 E:ARG20 2.8 35.3 1.0
CD E:ARG20 3.1 55.3 1.0
N D:GLU22 3.2 51.9 1.0
CA D:GLY21 3.4 54.1 1.0
CZ E:ARG20 3.6 45.9 1.0
NE E:ARG20 3.8 51.3 1.0
C D:GLY21 3.8 55.4 1.0
CB D:GLU22 4.2 51.8 1.0
CG D:GLU22 4.3 48.7 1.0
CA D:GLU22 4.3 52.0 1.0
CG E:ARG20 4.4 59.1 1.0
NE2 D:GLN17 4.5 78.2 1.0
N D:GLY21 4.7 50.4 1.0
NH1 E:ARG20 4.8 42.0 1.0
CB E:ARG20 4.9 57.7 1.0
OE1 D:GLN17 5.0 77.7 1.0
CD D:GLN17 5.0 78.4 1.0

Chlorine binding site 7 out of 8 in 7dft

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Chlorine binding site 7 out of 8 in the Crystal Structure of Xanthomonas Oryzae Clpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Xanthomonas Oryzae Clpp within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl301

b:24.6
occ:1.00
 O E:HOH516 2.4 55.0 1.0
N E:ALA147 3.3 13.1 1.0
ND1 E:HIS146 3.4 35.5 1.0
CA E:HIS146 3.7 21.5 1.0
CB E:HIS146 3.8 26.6 1.0
CB E:ALA147 4.0 21.1 1.0
CG E:HIS146 4.0 36.0 1.0
C E:HIS146 4.0 18.3 1.0
CA E:ALA147 4.2 19.3 1.0
O E:HOH484 4.4 25.2 1.0
CE1 E:HIS146 4.5 35.3 1.0
N E:HIS146 5.0 21.8 1.0

Chlorine binding site 8 out of 8 in 7dft

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Chlorine binding site 8 out of 8 in the Crystal Structure of Xanthomonas Oryzae Clpp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Xanthomonas Oryzae Clpp within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl301

b:18.2
occ:1.00
 NH2 G:ARG154 3.3 9.9 1.0
NE G:ARG154 3.4 7.7 1.0
CZ G:ARG154 3.7 19.1 1.0
CG2 G:ILE150 3.9 10.6 1.0
CD1 G:LEU133 4.0 13.9 1.0
CD G:ARG154 4.6 7.8 1.0
CB G:LEU133 4.9 8.7 1.0
CG G:LEU133 4.9 12.1 1.0
CD1 G:ILE150 4.9 9.3 1.0

Reference:

C.-G.Yang, T.Yang. Crystal Structure of Caseinolytic Protease P To Be Published.
Page generated: Mon Jul 29 20:05:15 2024

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