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Chlorine in PDB 7dfu: Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.

Enzymatic activity of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.

All present enzymatic activity of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.:
3.4.21.92;

Protein crystallography data

The structure of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4., PDB code: 7dfu was solved by C.-G.Yang, T.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.69 / 1.90
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 132.498, 132.498, 187.833, 90, 90, 90
R / Rfree (%) 21.7 / 24.3

Other elements in 7dfu:

The structure of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. also contains other interesting chemical elements:

Fluorine (F) 14 atoms
Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. (pdb code 7dfu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4., PDB code: 7dfu:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 7dfu

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Chlorine binding site 1 out of 7 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:18.6
occ:1.00
 N A:ALA147 3.3 9.9 1.0
ND1 A:HIS146 3.4 27.4 1.0
CA A:HIS146 3.6 15.0 1.0
CB A:HIS146 3.7 19.0 1.0
C A:HIS146 4.0 11.5 1.0
CG A:HIS146 4.0 26.0 1.0
CB A:ALA147 4.0 9.1 1.0
CA A:ALA147 4.2 11.6 1.0
O A:HOH570 4.5 13.7 1.0
CE1 A:HIS146 4.6 27.3 1.0
N A:HIS146 4.9 14.9 1.0
O A:ILE145 5.0 18.7 1.0

Chlorine binding site 2 out of 7 in 7dfu

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Chlorine binding site 2 out of 7 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:18.3
occ:1.00
 NH2 A:ARG154 3.2 15.2 1.0
NE A:ARG154 3.4 13.8 1.0
CZ A:ARG154 3.7 15.2 1.0
CG2 A:ILE150 3.8 10.1 1.0
CD1 A:LEU133 3.9 11.2 1.0
CD A:ARG154 4.6 10.3 1.0
CB A:LEU133 4.7 15.6 1.0
CG A:LEU133 4.8 15.7 1.0
CD1 A:ILE150 4.9 8.5 1.0
CB A:ILE150 5.0 10.8 1.0
NH1 A:ARG154 5.0 8.0 1.0

Chlorine binding site 3 out of 7 in 7dfu

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Chlorine binding site 3 out of 7 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:28.0
occ:1.00
 NE2 A:GLN102 3.2 15.4 1.0
O B:HOH546 3.3 18.6 1.0
N B:GLN139 3.3 32.7 1.0
N B:ALA140 3.8 25.1 1.0
CD1 B:ILE143 3.9 27.0 1.0
CA B:GLY138 4.0 28.8 1.0
CG2 B:ILE143 4.0 26.5 1.0
CD A:GLN102 4.1 16.4 1.0
OE1 A:GLN102 4.1 18.2 1.0
C B:GLY138 4.1 32.2 1.0
CA B:GLN139 4.2 30.3 1.0
CB B:GLN139 4.3 30.9 1.0
CB B:ILE143 4.3 27.5 1.0
O B:HOH514 4.4 17.5 1.0
NH2 A:ARG126 4.4 16.1 1.0
CB B:ALA140 4.4 35.1 1.0
CB A:PRO74 4.5 8.2 1.0
C B:GLN139 4.5 31.6 1.0
CG B:GLN139 4.6 31.1 1.0
CG1 B:ILE143 4.7 27.2 1.0
CA B:ALA140 4.7 31.0 1.0

Chlorine binding site 4 out of 7 in 7dfu

Go back to Chlorine Binding Sites List in 7dfu
Chlorine binding site 4 out of 7 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:19.3
occ:1.00
 NH2 B:ARG154 3.2 15.5 1.0
NE B:ARG154 3.4 15.7 1.0
CZ B:ARG154 3.7 13.9 1.0
CG2 B:ILE150 3.8 13.6 1.0
CD1 B:LEU133 3.8 15.4 1.0
CD B:ARG154 4.6 15.3 1.0
CB B:LEU133 4.6 13.4 1.0
CG B:LEU133 4.7 16.0 1.0
CD1 B:ILE150 4.9 11.6 1.0
CA B:LEU133 5.0 12.9 1.0
CB B:ILE150 5.0 14.3 1.0
NH1 B:ARG154 5.0 12.6 1.0

Chlorine binding site 5 out of 7 in 7dfu

Go back to Chlorine Binding Sites List in 7dfu
Chlorine binding site 5 out of 7 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl402

b:17.9
occ:1.00
 N C:ALA147 3.2 13.1 1.0
ND1 C:HIS146 3.3 34.3 1.0
CA C:HIS146 3.5 20.2 1.0
CB C:HIS146 3.6 23.4 1.0
C C:HIS146 3.9 15.9 1.0
CG C:HIS146 3.9 31.7 1.0
CB C:ALA147 4.0 12.7 1.0
CA C:ALA147 4.2 14.8 1.0
O C:HOH565 4.4 15.8 1.0
CE1 C:HIS146 4.5 35.1 1.0
N C:HIS146 4.8 19.2 1.0
O C:ILE145 4.8 21.8 1.0

Chlorine binding site 6 out of 7 in 7dfu

Go back to Chlorine Binding Sites List in 7dfu
Chlorine binding site 6 out of 7 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl402

b:14.4
occ:1.00
 N D:ALA147 3.3 9.4 1.0
ND1 D:HIS146 3.5 25.5 1.0
CA D:HIS146 3.6 14.6 1.0
CB D:HIS146 3.8 16.0 1.0
C D:HIS146 4.0 12.0 1.0
CB D:ALA147 4.0 14.4 1.0
CG D:HIS146 4.1 23.1 1.0
CA D:ALA147 4.2 13.3 1.0
O D:HOH556 4.4 15.1 1.0
CE1 D:HIS146 4.7 24.4 1.0
N D:HIS146 4.9 15.4 1.0
O D:ILE145 5.0 22.5 1.0

Chlorine binding site 7 out of 7 in 7dfu

Go back to Chlorine Binding Sites List in 7dfu
Chlorine binding site 7 out of 7 in the Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl402

b:20.7
occ:1.00
 NH2 E:ARG154 3.2 13.3 1.0
NE E:ARG154 3.4 12.8 1.0
CZ E:ARG154 3.7 11.6 1.0
CG2 E:ILE150 3.8 15.4 1.0
CD1 E:LEU133 4.0 12.2 1.0
CD E:ARG154 4.6 11.9 1.0
CB E:LEU133 4.8 12.7 1.0
CG E:LEU133 4.9 14.3 1.0
CD1 E:ILE150 5.0 9.6 1.0
NH1 E:ARG154 5.0 8.3 1.0

Reference:

C.-G.Yang, T.Yang. Crystal Structure of Xanthomonas Oryzae Clpp S68Y in Complex with ADEP4. To Be Published.
Page generated: Sun Jul 13 00:04:45 2025

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