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Chlorine in PDB 7dsz: Crystal Structure of AMUC_1102 From Akkermansia Muciniphila

Protein crystallography data

The structure of Crystal Structure of AMUC_1102 From Akkermansia Muciniphila, PDB code: 7dsz was solved by R.Xiang, J.Wang, Y.Wang, M.Zhang, M.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.64 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.469, 83.941, 107.252, 90, 90, 90
R / Rfree (%) 17.2 / 20

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of AMUC_1102 From Akkermansia Muciniphila (pdb code 7dsz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of AMUC_1102 From Akkermansia Muciniphila, PDB code: 7dsz:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 7dsz

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Chlorine binding site 1 out of 5 in the Crystal Structure of AMUC_1102 From Akkermansia Muciniphila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of AMUC_1102 From Akkermansia Muciniphila within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:47.5
occ:1.00
 O A:HOH431 3.2 39.9 1.0
N A:LEU42 3.2 20.4 1.0
O A:HOH595 3.2 42.9 1.0
O A:HOH572 3.3 44.1 1.0
CA A:SER41 3.8 18.5 1.0
O A:LEU42 3.8 21.6 1.0
CB A:SER41 3.9 25.1 1.0
O A:HOH613 3.9 38.5 1.0
C A:SER41 4.0 23.5 1.0
O A:HOH528 4.0 45.2 1.0
CA A:LEU42 4.1 19.9 1.0
CB A:LEU42 4.2 19.1 1.0
OG A:SER41 4.2 28.2 1.0
C A:LEU42 4.4 21.4 1.0
O A:HOH454 4.7 31.3 1.0

Chlorine binding site 2 out of 5 in 7dsz

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Chlorine binding site 2 out of 5 in the Crystal Structure of AMUC_1102 From Akkermansia Muciniphila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of AMUC_1102 From Akkermansia Muciniphila within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:51.5
occ:1.00
 O B:HOH591 3.0 55.5 1.0
N B:LEU42 3.1 24.8 1.0
O B:HOH409 3.2 42.4 1.0
CA B:SER41 3.7 24.0 1.0
C B:SER41 3.9 24.1 1.0
O B:HOH568 3.9 48.1 1.0
CB B:LEU42 4.0 26.1 1.0
CB B:SER41 4.0 29.2 1.0
CA B:LEU42 4.0 22.9 1.0
O B:LEU42 4.2 25.2 1.0
OG B:SER41 4.4 31.4 1.0
O B:HOH477 4.4 32.2 1.0
C B:LEU42 4.6 25.5 1.0
O B:LEU40 4.7 26.1 1.0
O B:HOH497 4.9 48.3 1.0
N B:SER41 4.9 22.4 1.0

Chlorine binding site 3 out of 5 in 7dsz

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Chlorine binding site 3 out of 5 in the Crystal Structure of AMUC_1102 From Akkermansia Muciniphila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of AMUC_1102 From Akkermansia Muciniphila within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:43.0
occ:1.00
 O B:HOH498 2.8 38.8 1.0
N B:LYS39 3.2 26.0 1.0
CB B:GLU38 3.3 29.4 1.0
O B:HOH478 3.6 39.0 1.0
O B:LYS39 3.8 23.3 1.0
CB B:LYS39 3.8 31.3 1.0
CA B:LYS39 3.9 29.7 1.0
CG B:PRO71 4.0 26.4 1.0
CD B:PRO71 4.0 23.9 1.0
CE B:LYS39 4.1 55.1 1.0
C B:GLU38 4.1 25.8 1.0
CA B:GLU38 4.2 26.4 1.0
C B:LYS39 4.3 23.8 1.0
CG B:LYS39 4.3 33.0 1.0
CG B:GLU38 4.4 44.0 1.0
CD B:LYS39 4.8 40.8 1.0
OG B:SER41 4.9 31.4 1.0

Chlorine binding site 4 out of 5 in 7dsz

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Chlorine binding site 4 out of 5 in the Crystal Structure of AMUC_1102 From Akkermansia Muciniphila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of AMUC_1102 From Akkermansia Muciniphila within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl301

b:33.1
occ:1.00
 N C:LEU42 3.3 20.4 1.0
O C:HOH604 3.3 46.9 1.0
O C:HOH538 3.5 36.2 1.0
O C:LEU42 3.6 23.4 1.0
O C:HOH444 3.7 39.8 1.0
CA C:SER41 3.8 18.8 1.0
O C:HOH495 3.8 38.3 1.0
CB C:SER41 3.9 22.9 1.0
C C:SER41 4.0 21.2 1.0
OG C:SER41 4.2 25.4 1.0
CA C:LEU42 4.2 19.0 1.0
C C:LEU42 4.3 19.8 1.0
CB C:LEU42 4.4 20.0 1.0
O C:HOH623 4.4 45.7 1.0
O C:HOH428 4.6 33.3 1.0

Chlorine binding site 5 out of 5 in 7dsz

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Chlorine binding site 5 out of 5 in the Crystal Structure of AMUC_1102 From Akkermansia Muciniphila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of AMUC_1102 From Akkermansia Muciniphila within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:53.3
occ:1.00
 O C:HOH451 2.8 26.8 1.0
O C:HOH523 3.2 41.5 1.0
N C:LYS39 3.3 23.3 1.0
CB C:LYS39 3.6 28.9 1.0
CB C:GLU38 3.8 26.9 1.0
O C:LYS39 3.8 22.8 1.0
CA C:LYS39 3.9 24.6 1.0
CG C:LYS39 4.0 31.4 1.0
C C:LYS39 4.3 21.9 1.0
C C:GLU38 4.4 22.5 1.0
CD C:LYS39 4.5 37.9 1.0
CG C:PRO71 4.6 18.8 1.0
CA C:GLU38 4.6 24.1 1.0
OG C:SER41 4.6 25.4 1.0
CD C:PRO71 4.6 18.6 1.0
CG C:GLU38 4.8 29.3 1.0

Reference:

R.Xiang, J.Wang, W.Xu, M.Zhang, M.Wang. AMUC_1102 Fromakkermansia Muciniphilaadopts Animmunoglobulin-Like Fold Related to Archaeal Type IV Pilus Biochem.Biophys.Res.Commun. V. 547 59 2021.
ISSN: ESSN 1090-2104
DOI: 10.1016/J.BBRC.2021.02.022
Page generated: Sun Jul 13 00:13:07 2025

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