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Chlorine in PDB 7dy5: Structure of the Ternary Complex of Peptidoglycan Recognition Protein- Short (Pgrp-S) with Hexanoic Acid and Tartaric Acid at 2.30A Resolution

Protein crystallography data

The structure of Structure of the Ternary Complex of Peptidoglycan Recognition Protein- Short (Pgrp-S) with Hexanoic Acid and Tartaric Acid at 2.30A Resolution, PDB code: 7dy5 was solved by A.Maurya, V.Viswanathan, P.Sharma, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.68 / 2.30
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 89.085, 101.355, 163.022, 90, 90, 90
R / Rfree (%) 18.8 / 25.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the Ternary Complex of Peptidoglycan Recognition Protein- Short (Pgrp-S) with Hexanoic Acid and Tartaric Acid at 2.30A Resolution (pdb code 7dy5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of the Ternary Complex of Peptidoglycan Recognition Protein- Short (Pgrp-S) with Hexanoic Acid and Tartaric Acid at 2.30A Resolution, PDB code: 7dy5:

Chlorine binding site 1 out of 1 in 7dy5

Go back to Chlorine Binding Sites List in 7dy5
Chlorine binding site 1 out of 1 in the Structure of the Ternary Complex of Peptidoglycan Recognition Protein- Short (Pgrp-S) with Hexanoic Acid and Tartaric Acid at 2.30A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Ternary Complex of Peptidoglycan Recognition Protein- Short (Pgrp-S) with Hexanoic Acid and Tartaric Acid at 2.30A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:41.5
occ:1.00
O B:HOH466 2.9 26.3 1.0
NH2 B:ARG85 3.2 18.2 1.0
CG B:TRP66 3.7 29.3 1.0
CB B:TRP66 3.7 16.7 1.0
SG B:CYS67 3.7 32.2 1.0
CB B:ALA92 3.8 15.1 1.0
NH1 B:ARG85 3.8 22.2 1.0
N B:CYS67 4.0 22.7 1.0
CZ B:ARG85 4.0 21.0 1.0
CD1 B:TRP66 4.0 24.2 1.0
CA B:TRP66 4.1 21.4 1.0
CD2 B:TRP66 4.1 22.3 1.0
O B:HOH408 4.3 33.3 1.0
C B:TRP66 4.6 26.6 1.0
NE1 B:TRP66 4.6 23.6 1.0
CE3 B:TRP66 4.7 23.5 1.0
CE2 B:TRP66 4.7 21.1 1.0
CB B:CYS67 4.8 20.9 1.0
CA B:CYS67 5.0 23.8 1.0

Reference:

A.Maurya, V.Viswanathan, P.Sharma, S.Sharma, T.P.Singh. Structure of the Ternary Complex of Peptidoglycan Recognition Protein-Short (Pgrp-S) To Be Published.
Page generated: Sun Jul 13 00:15:20 2025

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