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Chlorine in PDB 7ev2: Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Y-11 and Atp

Enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Y-11 and Atp

All present enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Y-11 and Atp:
6.1.1.2;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Y-11 and Atp, PDB code: 7ev2 was solved by M.Xu, S.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.64 / 2.10
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.548, 61.548, 335.48, 90, 90, 120
R / Rfree (%) 19.7 / 22.4

Other elements in 7ev2:

The structure of Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Y-11 and Atp also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Y-11 and Atp (pdb code 7ev2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Y-11 and Atp, PDB code: 7ev2:

Chlorine binding site 1 out of 1 in 7ev2

Go back to Chlorine Binding Sites List in 7ev2
Chlorine binding site 1 out of 1 in the Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Y-11 and Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mycobacterium Tuberculosis Tryptophanyl-Trna Synthetase Complexed with Y-11 and Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:53.0
occ:1.00
 CL A:JE0403 0.0 53.0 1.0
C12 A:JE0403 1.7 21.6 1.0
C11 A:JE0403 2.7 18.7 1.0
C13 A:JE0403 2.7 19.1 1.0
C1 A:JE0403 3.3 17.8 1.0
C6 A:JE0403 3.3 21.1 1.0
CD A:GLN156 3.5 31.0 1.0
CG A:GLN156 3.6 27.2 1.0
O A:GLY13 3.6 17.4 1.0
CG1 A:VAL152 3.7 25.6 1.0
NE2 A:GLN138 3.7 19.6 1.0
O A:HOH517 3.8 24.8 1.0
C3' A:ATP401 3.8 24.1 1.0
OE1 A:GLN156 3.8 30.7 1.0
O3' A:ATP401 3.9 22.6 1.0
NE2 A:GLN156 3.9 24.5 1.0
C10 A:JE0403 4.0 19.0 1.0
C8 A:JE0403 4.0 16.5 1.0
C A:JE0403 4.0 20.4 1.0
C5' A:ATP401 4.4 24.3 1.0
C2 A:JE0403 4.4 18.8 1.0
CB A:GLN156 4.5 21.6 1.0
C4' A:ATP401 4.5 26.0 1.0
C9 A:JE0403 4.5 16.9 1.0
C7 A:JE0403 4.6 16.7 1.0
CB A:VAL152 4.7 22.8 1.0
C A:GLY13 4.7 18.3 1.0
CD A:GLN138 4.7 19.9 1.0
N A:GLY13 4.8 17.8 1.0
N2 A:JE0403 4.9 15.4 1.0
OG A:SER12 5.0 25.9 1.0
O1 A:JE0403 5.0 25.5 1.0

Reference:

Y.Yang, Y.Xu, Y.Yue, H.Wang, Y.Cui, M.Pan, X.Zhang, L.Zhang, H.Li, M.Xu, Y.Tang, S.Chen. Investigate Natural Product Indolmycin and the Synthetically Improved Analogue Toward Antimycobacterial Agents. Acs Chem.Biol. V. 17 39 2022.
ISSN: ESSN 1554-8937
PubMed: 34908399
DOI: 10.1021/ACSCHEMBIO.1C00394
Page generated: Mon Jul 29 20:36:27 2024

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