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Chlorine in PDB 7fgj: The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain.

Protein crystallography data

The structure of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain., PDB code: 7fgj was solved by T.Tsuchida, T.Tsuchiya, K.Miyamoto, Y.In, K.Minoura, T.Taniguchi, T.Ishida, K.Tomoo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.15 / 1.89
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 69.931, 179.704, 41.431, 90, 90, 90
R / Rfree (%) 19.6 / 26.2

Other elements in 7fgj:

The structure of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. also contains other interesting chemical elements:

Iodine (I) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. (pdb code 7fgj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain., PDB code: 7fgj:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 7fgj

Go back to Chlorine Binding Sites List in 7fgj
Chlorine binding site 1 out of 7 in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl303

b:19.3
occ:1.00
 O H:GLN43 3.5 32.0 1.0
N H:GLY42 3.6 32.3 1.0
O H:HOH589 3.6 35.2 1.0
O H:HOH485 3.9 41.8 1.0
N H:GLN43 4.0 31.9 1.0
CB H:ARG40 4.2 26.4 1.0
CA H:GLY42 4.2 34.8 1.0
N H:PRO41 4.4 27.0 1.0
CD H:PRO41 4.5 27.5 1.0
CD H:ARG40 4.5 28.1 1.0
C H:GLN43 4.6 29.8 1.0
C H:PRO41 4.6 31.4 1.0
C H:GLY42 4.6 31.1 1.0
CB H:PRO41 4.8 26.6 1.0
C H:ARG40 4.8 28.2 1.0
CA H:PRO41 4.9 30.1 1.0
CA H:GLN43 4.9 31.1 1.0
CG H:ARG40 5.0 27.4 1.0

Chlorine binding site 2 out of 7 in 7fgj

Go back to Chlorine Binding Sites List in 7fgj
Chlorine binding site 2 out of 7 in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl304

b:31.0
occ:1.00
 N H:ARG219 3.5 53.5 1.0
CG H:PRO132 3.5 42.9 1.0
CA H:PRO218 4.0 38.1 1.0
CG H:ARG219 4.0 69.2 1.0
CD H:PRO132 4.1 38.3 1.0
CG2 H:THR137 4.1 67.2 1.0
CB H:ARG219 4.2 66.7 1.0
CB H:PRO218 4.3 38.8 1.0
C H:PRO218 4.3 45.4 1.0
CH2 H:TRP194 4.3 30.2 1.0
NH1 H:ARG219 4.4 89.3 1.0
CA H:ARG219 4.5 60.2 1.0
O H:PRO132 4.5 45.2 1.0
CB H:THR137 4.6 70.8 1.0
CZ3 H:TRP194 4.6 33.0 1.0
CB H:ALA131 4.6 44.0 1.0
CB H:PRO132 4.7 39.6 1.0
N H:PRO132 4.7 40.2 1.0
CD H:ARG219 4.9 74.5 1.0

Chlorine binding site 3 out of 7 in 7fgj

Go back to Chlorine Binding Sites List in 7fgj
Chlorine binding site 3 out of 7 in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl305

b:32.4
occ:1.00
 CD H:GLN82 3.8 55.6 1.0
CG H:GLN82 3.8 39.7 1.0
NE2 H:GLN82 4.0 62.6 1.0
CB H:SER17 4.0 28.3 1.0
CB H:LYS19 4.0 33.1 1.0
C H:VAL18 4.1 25.3 1.0
N H:LYS19 4.1 27.9 1.0
OE1 H:GLN82 4.2 66.8 1.0
O H:VAL18 4.2 27.6 1.0
N H:VAL18 4.3 28.8 1.0
C H:SER17 4.4 27.9 1.0
CA H:VAL18 4.5 27.9 1.0
O H:SER17 4.6 27.9 1.0
CA H:LYS19 4.6 31.0 1.0
O H:HOH583 4.7 38.7 1.0
CE H:LYS19 4.8 51.6 1.0
CA H:SER17 4.8 26.8 1.0
CB H:GLN82 4.9 31.7 1.0

Chlorine binding site 4 out of 7 in 7fgj

Go back to Chlorine Binding Sites List in 7fgj
Chlorine binding site 4 out of 7 in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl306

b:46.7
occ:1.00
 O H:HOH600 3.6 58.4 1.0
O H:LYS19 3.6 30.8 1.0
CB H:SER21 3.8 28.5 1.0
OG H:SER21 4.0 31.1 1.0
CE2 H:TYR80 4.2 35.8 1.0
C H:LYS19 4.2 28.3 1.0
N H:SER21 4.2 31.3 1.0
CG H:LYS19 4.3 39.6 1.0
CD2 H:TYR80 4.3 33.4 1.0
C H:VAL20 4.4 29.3 1.0
CA H:VAL20 4.5 27.3 1.0
O H:HOH495 4.5 42.3 1.0
N H:VAL20 4.6 26.6 1.0
CA H:SER21 4.6 28.8 1.0
CB H:LYS19 4.7 33.1 1.0
OG H:SER7 4.7 33.6 1.0
CB H:SER7 4.7 29.9 1.0
CD H:LYS19 4.8 45.0 1.0
O H:VAL20 4.9 29.4 1.0

Chlorine binding site 5 out of 7 in 7fgj

Go back to Chlorine Binding Sites List in 7fgj
Chlorine binding site 5 out of 7 in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl304

b:20.9
occ:1.00
 O L:HOH485 3.4 44.7 1.0
CA L:ALA88 3.9 32.0 1.0
CE L:LYS111 4.0 46.3 1.0
C L:ALA88 4.1 31.1 1.0
N L:ALA88 4.2 30.8 1.0
CD L:PRO40 4.2 58.7 1.0
N L:ILE89 4.2 28.7 1.0
CG L:PRO40 4.3 62.8 1.0
CG1 L:ILE89 4.3 35.4 1.0
O L:ALA88 4.6 29.8 1.0
O L:GLN38 4.6 34.2 1.0
CG L:LYS111 4.7 39.0 1.0
CD L:LYS111 4.7 41.0 1.0
C L:GLU87 4.7 32.8 1.0
CD1 L:ILE89 4.8 39.6 1.0
O L:GLU87 4.9 36.4 1.0
CA L:GLN39 5.0 49.6 1.0

Chlorine binding site 6 out of 7 in 7fgj

Go back to Chlorine Binding Sites List in 7fgj
Chlorine binding site 6 out of 7 in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl305

b:21.8
occ:1.00
 O L:HOH539 3.1 48.3 1.0
O L:HOH576 3.4 49.3 1.0
CE1 L:HIS196 3.5 45.1 1.0
NE2 L:HIS196 3.9 40.6 1.0
NE2 L:GLN192 4.0 44.3 1.0
CD2 L:LEU188 4.1 34.8 1.0
ND1 L:HIS196 4.1 40.2 1.0
CB L:ALA159 4.1 32.2 1.0
CB L:GLN192 4.2 35.3 1.0
CD L:GLN192 4.3 39.9 1.0
CE2 L:PHE199 4.4 27.5 1.0
CG L:GLN192 4.4 37.6 1.0
CD2 L:HIS196 4.7 42.4 1.0
O L:HOH481 4.7 53.1 1.0
CD1 L:ILE164 4.8 47.0 1.0
CG1 L:ILE164 4.8 41.2 1.0
CG L:HIS196 4.8 40.6 1.0
CZ L:PHE199 4.9 29.8 1.0
O L:HOH531 4.9 41.2 1.0

Chlorine binding site 7 out of 7 in 7fgj

Go back to Chlorine Binding Sites List in 7fgj
Chlorine binding site 7 out of 7 in the The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of The Cross-Reaction Complex Structure with Vqilnk Peptide and the Tau Antibody'S Fab Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl306

b:34.0
occ:1.00
 O L:HOH561 3.4 47.1 1.0
NZ L:LYS175 3.4 71.7 1.0
CB L:ASN178 3.5 47.0 1.0
CA L:ASN178 3.7 42.0 1.0
N L:GLU85 3.9 38.9 1.0
CA L:GLU85 4.0 45.5 1.0
C L:PRO84 4.1 38.8 1.0
O L:PRO84 4.1 36.2 1.0
CB L:PRO84 4.3 41.4 1.0
CG L:GLU85 4.4 64.9 1.0
O L:ASN178 4.5 36.2 1.0
C L:ASN178 4.6 37.8 1.0
CE L:LYS175 4.6 64.3 1.0
O L:GLY177 4.6 46.3 1.0
CB L:GLU85 4.7 54.2 1.0
N L:ASN178 4.7 40.4 1.0
O L:HOH500 4.8 51.6 1.0
OE2 L:GLU85 4.9 69.4 1.0
CA L:PRO84 4.9 41.9 1.0
CG L:ASN178 5.0 50.5 1.0

Reference:

T.Tsuchida, T.Tsuchiya, K.Miyamoto, Y.In, K.Minoura, T.Taniguchi, T.Ishida, K.Tomoo. The Cross-Reaction Complex Structure with Vqilnk Peptide and the Antibody'S Fab Domain. To Be Published.
Page generated: Sun Jul 13 00:37:23 2025

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