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Chlorine in PDB 7gb6: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jor-Uni-2FC98D0B-12 (Mpro-X10236)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jor-Uni-2FC98D0B-12 (Mpro-X10236)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jor-Uni-2FC98D0B-12 (Mpro-X10236):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jor-Uni-2FC98D0B-12 (Mpro-X10236), PDB code: 7gb6 was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.01 / 1.84
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.118, 53.529, 44.344, 90, 101.01, 90
R / Rfree (%) 17.6 / 21.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jor-Uni-2FC98D0B-12 (Mpro-X10236) (pdb code 7gb6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jor-Uni-2FC98D0B-12 (Mpro-X10236), PDB code: 7gb6:

Chlorine binding site 1 out of 1 in 7gb6

Go back to Chlorine Binding Sites List in 7gb6
Chlorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jor-Uni-2FC98D0B-12 (Mpro-X10236)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jor-Uni-2FC98D0B-12 (Mpro-X10236) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:29.3
occ:1.00
CL A:KP0405 0.0 29.3 1.0
C A:KP0405 1.7 28.6 1.0
C5 A:KP0405 2.7 28.1 1.0
C1 A:KP0405 2.7 28.7 1.0
CB A:ASP187 3.1 22.5 1.0
CA A:ASP187 3.3 22.7 1.0
CB A:MET165 3.6 24.2 1.0
ND1 A:HIS41 3.7 23.2 1.0
C A:ASP187 3.8 24.1 1.0
SD A:MET165 3.8 36.6 1.0
O A:HIS164 3.9 20.5 1.0
C2 A:KP0405 4.0 29.2 1.0
C4 A:KP0405 4.0 28.2 1.0
O A:HOH606 4.1 17.8 1.0
CG A:MET165 4.1 28.2 1.0
N A:ARG188 4.2 25.6 1.0
C A:HIS164 4.2 20.8 1.0
CB A:HIS164 4.2 19.7 1.0
CE A:MET49 4.2 44.5 1.0
CE1 A:HIS41 4.3 23.4 1.0
O A:ASP187 4.4 23.4 1.0
CA A:MET165 4.5 23.1 1.0
C3 A:KP0405 4.5 28.7 1.0
CG A:ASP187 4.5 22.4 1.0
N A:ASP187 4.5 22.6 1.0
CG A:HIS41 4.6 21.0 1.0
CZ A:PHE181 4.6 21.2 1.0
N A:MET165 4.6 21.9 1.0
CA A:HIS164 4.8 19.5 1.0
ND1 A:HIS164 4.8 23.3 1.0
O A:VAL186 4.8 24.4 1.0
CB A:HIS41 4.9 19.6 1.0
CE A:MET165 4.9 32.3 1.0
OH A:TYR54 5.0 23.3 1.0
OD2 A:ASP187 5.0 23.8 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Sun Jul 13 01:19:21 2025

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