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Chlorine in PDB 7gcq: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Try-Uni-2EDDB1FF-2 (Mpro-X10723)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Try-Uni-2EDDB1FF-2 (Mpro-X10723)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Try-Uni-2EDDB1FF-2 (Mpro-X10723):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Try-Uni-2EDDB1FF-2 (Mpro-X10723), PDB code: 7gcq was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.97 / 1.69
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 112.52, 52.93, 43.947, 90, 102.31, 90
R / Rfree (%) 19.8 / 23.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Try-Uni-2EDDB1FF-2 (Mpro-X10723) (pdb code 7gcq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Try-Uni-2EDDB1FF-2 (Mpro-X10723), PDB code: 7gcq:

Chlorine binding site 1 out of 1 in 7gcq

Go back to Chlorine Binding Sites List in 7gcq
Chlorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Try-Uni-2EDDB1FF-2 (Mpro-X10723)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Try-Uni-2EDDB1FF-2 (Mpro-X10723) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:33.8
occ:1.00
CL A:LRC405 0.0 33.8 1.0
C11 A:LRC405 1.7 32.6 1.0
C12 A:LRC405 2.7 31.5 1.0
C10 A:LRC405 2.7 32.4 1.0
CB A:ASP187 3.1 21.8 1.0
ND1 A:HIS41 3.2 27.4 1.0
CA A:ASP187 3.4 22.9 1.0
O A:HIS164 3.7 23.1 1.0
C A:ASP187 3.8 24.0 1.0
CE1 A:HIS41 3.8 27.6 1.0
N2 A:LRC405 4.0 31.9 1.0
C8 A:LRC405 4.0 30.9 1.0
CB A:MET165 4.0 22.5 1.0
CG A:HIS41 4.0 24.9 1.0
SD A:MET165 4.0 34.2 1.0
CE A:MET49 4.0 47.0 1.0
O A:HOH610 4.1 24.8 1.0
CB A:HIS164 4.2 19.4 1.0
O A:ASP187 4.2 23.2 1.0
C A:HIS164 4.2 21.4 1.0
N A:ARG188 4.3 25.8 1.0
CG A:MET165 4.3 26.8 1.0
CB A:HIS41 4.3 23.0 1.0
C9 A:LRC405 4.4 31.5 1.0
CG A:ASP187 4.5 22.2 1.0
CA A:MET165 4.7 21.8 1.0
N A:ASP187 4.7 23.1 1.0
OH A:TYR54 4.7 27.0 1.0
CZ A:PHE181 4.7 24.1 1.0
NE2 A:HIS41 4.7 27.8 1.0
N A:MET165 4.8 21.1 1.0
ND1 A:HIS164 4.8 19.9 1.0
CA A:HIS164 4.8 19.8 1.0
CD2 A:HIS41 4.8 26.4 1.0
OD2 A:ASP187 5.0 21.4 1.0
CG A:HIS164 5.0 19.0 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Sun Jul 13 01:21:00 2025

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