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Chlorine in PDB 7gel: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jag-Ucb-CEDD89AB-1 (Mpro-X11475)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jag-Ucb-CEDD89AB-1 (Mpro-X11475)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jag-Ucb-CEDD89AB-1 (Mpro-X11475):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jag-Ucb-CEDD89AB-1 (Mpro-X11475), PDB code: 7gel was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.02 / 1.49
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.08, 53.451, 44.394, 90, 100.84, 90
R / Rfree (%) 18.7 / 21.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jag-Ucb-CEDD89AB-1 (Mpro-X11475) (pdb code 7gel). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jag-Ucb-CEDD89AB-1 (Mpro-X11475), PDB code: 7gel:

Chlorine binding site 1 out of 1 in 7gel

Go back to Chlorine Binding Sites List in 7gel
Chlorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jag-Ucb-CEDD89AB-1 (Mpro-X11475)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Jag-Ucb-CEDD89AB-1 (Mpro-X11475) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:31.2
occ:0.84
CL A:NQ3404 0.0 31.2 0.8
C13 A:NQ3404 1.7 29.3 0.8
C12 A:NQ3404 2.7 28.6 0.8
C14 A:NQ3404 2.7 27.4 0.8
CE A:MET49 2.9 41.4 1.0
OH A:TYR54 3.0 13.6 1.0
CB A:HIS41 3.2 13.6 1.0
O A:ASP187 3.2 13.0 1.0
CG A:HIS41 3.4 15.7 1.0
ND1 A:HIS41 3.6 16.8 1.0
C A:ASP187 3.6 14.1 1.0
CB A:ASP187 3.9 12.0 1.0
C11 A:NQ3404 4.0 28.0 0.8
C9 A:NQ3404 4.0 25.7 0.8
CA A:ASP187 4.1 13.1 1.0
N A:ARG188 4.2 15.8 1.0
CD2 A:HIS41 4.3 16.9 1.0
CZ A:TYR54 4.4 12.9 1.0
CE1 A:HIS41 4.4 17.0 1.0
C10 A:NQ3404 4.5 27.0 0.8
SD A:MET49 4.6 44.7 1.0
CA A:HIS41 4.6 12.8 1.0
CA A:ARG188 4.6 18.2 1.0
O A:HOH609 4.6 13.7 1.0
CG A:ASP187 4.7 12.1 1.0
NE2 A:HIS41 4.8 17.1 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Sun Jul 13 01:23:05 2025

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