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Chlorine in PDB 7gem: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485), PDB code: 7gem was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.95 / 1.32
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.976, 53.519, 44.258, 90, 100.93, 90
R / Rfree (%) 16.8 / 20.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485) (pdb code 7gem). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485), PDB code: 7gem:

Chlorine binding site 1 out of 1 in 7gem

Go back to Chlorine Binding Sites List in 7gem
Chlorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:22.3
occ:1.00
CL A:NQO404 0.0 22.3 1.0
C11 A:NQO404 1.7 20.9 1.0
C12 A:NQO404 2.7 20.5 1.0
C10 A:NQO404 2.7 21.5 1.0
CB A:ASP187 3.3 13.5 1.0
ND1 A:HIS41 3.3 15.4 1.0
CA A:ASP187 3.5 14.5 1.0
O A:HIS164 3.7 12.2 1.0
CE1 A:HIS41 3.7 15.3 1.0
CB A:MET165 3.9 15.4 1.0
C A:ASP187 3.9 15.3 1.0
SD A:MET165 3.9 20.6 1.0
C9 A:NQO404 4.0 21.9 1.0
C7 A:NQO404 4.0 20.2 1.0
CG A:HIS41 4.0 14.6 1.0
CE A:MET49 4.1 30.1 1.0
O A:HOH625 4.1 13.0 1.0
O A:ASP187 4.3 15.0 1.0
CB A:HIS164 4.3 11.4 1.0
C A:HIS164 4.3 12.1 1.0
N A:ARG188 4.3 16.7 1.0
CG A:MET165 4.4 16.3 1.0
CB A:HIS41 4.4 14.2 1.0
C8 A:NQO404 4.5 21.2 1.0
NE2 A:HIS41 4.6 15.7 1.0
CG A:ASP187 4.6 12.8 1.0
CD2 A:HIS41 4.7 14.8 1.0
OH A:TYR54 4.7 13.0 1.0
N A:ASP187 4.9 14.2 1.0
CA A:HIS164 4.9 11.6 1.0
CA A:MET165 4.9 14.0 1.0
ND1 A:HIS164 4.9 11.1 1.0
N A:MET165 4.9 12.9 1.0
OD2 A:ASP187 5.0 12.5 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Sun Jul 13 01:23:06 2025

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