Atomistry » Chlorine » PDB 7gbp-7gem » 7gem
Atomistry »
  Chlorine »
    PDB 7gbp-7gem »
      7gem »

Chlorine in PDB 7gem: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485), PDB code: 7gem was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.95 / 1.32
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.976, 53.519, 44.258, 90, 100.93, 90
R / Rfree (%) 16.8 / 20.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485) (pdb code 7gem). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485), PDB code: 7gem:

Chlorine binding site 1 out of 1 in 7gem

Go back to Chlorine Binding Sites List in 7gem
Chlorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0DA5AD92-15 (Mpro-X11485) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:22.3
occ:1.00
CL A:NQO404 0.0 22.3 1.0
C11 A:NQO404 1.7 20.9 1.0
C12 A:NQO404 2.7 20.5 1.0
C10 A:NQO404 2.7 21.5 1.0
CB A:ASP187 3.3 13.5 1.0
ND1 A:HIS41 3.3 15.4 1.0
CA A:ASP187 3.5 14.5 1.0
O A:HIS164 3.7 12.2 1.0
CE1 A:HIS41 3.7 15.3 1.0
CB A:MET165 3.9 15.4 1.0
C A:ASP187 3.9 15.3 1.0
SD A:MET165 3.9 20.6 1.0
C9 A:NQO404 4.0 21.9 1.0
C7 A:NQO404 4.0 20.2 1.0
CG A:HIS41 4.0 14.6 1.0
CE A:MET49 4.1 30.1 1.0
O A:HOH625 4.1 13.0 1.0
O A:ASP187 4.3 15.0 1.0
CB A:HIS164 4.3 11.4 1.0
C A:HIS164 4.3 12.1 1.0
N A:ARG188 4.3 16.7 1.0
CG A:MET165 4.4 16.3 1.0
CB A:HIS41 4.4 14.2 1.0
C8 A:NQO404 4.5 21.2 1.0
NE2 A:HIS41 4.6 15.7 1.0
CG A:ASP187 4.6 12.8 1.0
CD2 A:HIS41 4.7 14.8 1.0
OH A:TYR54 4.7 13.0 1.0
N A:ASP187 4.9 14.2 1.0
CA A:HIS164 4.9 11.6 1.0
CA A:MET165 4.9 14.0 1.0
ND1 A:HIS164 4.9 11.1 1.0
N A:MET165 4.9 12.9 1.0
OD2 A:ASP187 5.0 12.5 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Sun Jul 13 01:23:06 2025

Last articles

Fe in 2EWK
Fe in 2EWI
Fe in 2EWU
Fe in 2FA7
Fe in 2F9Q
Fe in 2EXV
Fe in 2EUU
Fe in 2EUT
Fe in 2EVP
Fe in 2EVK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy