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Chlorine in PDB 7gf1: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-95B75B4D-5 (Mpro-X11543)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-95B75B4D-5 (Mpro-X11543)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-95B75B4D-5 (Mpro-X11543):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-95B75B4D-5 (Mpro-X11543), PDB code: 7gf1 was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.72 / 1.88
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.738, 53.453, 44.584, 90, 101.55, 90
R / Rfree (%) 20.4 / 25.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-95B75B4D-5 (Mpro-X11543) (pdb code 7gf1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-95B75B4D-5 (Mpro-X11543), PDB code: 7gf1:

Chlorine binding site 1 out of 1 in 7gf1

Go back to Chlorine Binding Sites List in 7gf1
Chlorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-95B75B4D-5 (Mpro-X11543)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-95B75B4D-5 (Mpro-X11543) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:41.4
occ:0.98
CL A:O0R404 0.0 41.4 1.0
C A:O0R404 1.7 41.4 1.0
C15 A:O0R404 2.7 41.2 1.0
C1 A:O0R404 2.7 41.5 1.0
CB A:ASP187 3.1 32.4 1.0
ND1 A:HIS41 3.2 35.6 1.0
CA A:ASP187 3.5 33.1 1.0
CE1 A:HIS41 3.7 36.1 1.0
O A:HIS164 3.7 31.4 1.0
O A:HOH576 3.9 22.9 1.0
SD A:MET165 4.0 42.6 1.0
CB A:MET165 4.0 33.5 1.0
C2 A:O0R404 4.0 41.5 1.0
C4 A:O0R404 4.0 40.9 1.0
C A:ASP187 4.0 34.5 1.0
CG A:HIS41 4.1 33.5 1.0
CG A:MET165 4.1 36.2 1.0
C A:HIS164 4.1 30.5 1.0
CB A:HIS164 4.1 27.2 1.0
CE A:MET49 4.5 58.4 1.0
C3 A:O0R404 4.5 41.2 1.0
CA A:MET165 4.5 32.4 1.0
CG A:ASP187 4.5 33.9 1.0
O A:ASP187 4.5 33.2 1.0
N A:ARG188 4.5 36.1 1.0
CB A:HIS41 4.5 32.5 1.0
N A:MET165 4.6 30.7 1.0
CZ A:PHE181 4.6 34.2 1.0
CA A:HIS164 4.7 28.6 1.0
NE2 A:HIS41 4.7 35.7 1.0
ND1 A:HIS164 4.7 26.7 1.0
N A:ASP187 4.7 33.2 1.0
CD2 A:HIS41 4.9 34.6 1.0
OD2 A:ASP187 4.9 33.7 1.0
CG A:HIS164 4.9 26.5 1.0
OH A:TYR54 5.0 38.9 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Sun Jul 13 01:24:11 2025

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