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Chlorine in PDB 7gfr: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Pet-Unk-3C72D439-1 (Mpro-X11810)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Pet-Unk-3C72D439-1 (Mpro-X11810)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Pet-Unk-3C72D439-1 (Mpro-X11810):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Pet-Unk-3C72D439-1 (Mpro-X11810), PDB code: 7gfr was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.06 / 1.46
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.193, 53.466, 44.417, 90, 100.96, 90
R / Rfree (%) 18.9 / 22.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Pet-Unk-3C72D439-1 (Mpro-X11810) (pdb code 7gfr). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Pet-Unk-3C72D439-1 (Mpro-X11810), PDB code: 7gfr:

Chlorine binding site 1 out of 1 in 7gfr

Go back to Chlorine Binding Sites List in 7gfr
Chlorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Pet-Unk-3C72D439-1 (Mpro-X11810)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Pet-Unk-3C72D439-1 (Mpro-X11810) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:19.3
occ:1.00
CL A:OIE404 0.0 19.3 1.0
C A:OIE404 1.7 18.5 1.0
C15 A:OIE404 2.7 17.9 1.0
C1 A:OIE404 2.7 18.8 1.0
CB A:ASP187 3.2 11.3 1.0
ND1 A:HIS41 3.4 17.2 1.0
CA A:ASP187 3.5 12.6 1.0
O A:HIS164 3.7 12.2 1.0
CE1 A:HIS41 3.8 17.0 1.0
C A:ASP187 3.9 13.9 1.0
CB A:MET165 3.9 12.5 1.0
C2 A:OIE404 4.0 18.6 1.0
C3 A:OIE404 4.0 17.7 1.0
CG A:HIS41 4.0 14.8 1.0
O A:HOH652 4.0 12.1 1.0
SD A:MET165 4.1 20.2 1.0
CE A:MET49 4.2 31.8 1.0
O A:ASP187 4.2 13.5 1.0
C A:HIS164 4.3 11.1 1.0
CB A:HIS164 4.3 9.6 1.0
CG A:MET165 4.3 16.1 1.0
N A:ARG188 4.4 15.0 1.0
CB A:HIS41 4.5 13.1 1.0
N A:OIE404 4.5 18.2 1.0
CG A:ASP187 4.6 12.5 1.0
NE2 A:HIS41 4.6 17.3 1.0
CA A:MET165 4.7 11.4 1.0
CD2 A:HIS41 4.7 16.0 1.0
N A:ASP187 4.8 12.7 1.0
OH A:TYR54 4.8 13.6 1.0
N A:MET165 4.8 11.0 1.0
ND1 A:HIS164 4.9 9.2 1.0
CA A:HIS164 4.9 9.8 1.0
CZ A:PHE181 4.9 11.6 1.0
OD2 A:ASP187 5.0 12.5 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Sun Jul 13 01:25:12 2025

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