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Chlorine in PDB 7ggg: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-D6DE1F3C-2 (Mpro-X12582)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-D6DE1F3C-2 (Mpro-X12582)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-D6DE1F3C-2 (Mpro-X12582):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-D6DE1F3C-2 (Mpro-X12582), PDB code: 7ggg was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.51 / 1.74
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.496, 53.274, 44.98, 90, 101.99, 90
R / Rfree (%) 18.9 / 22.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-D6DE1F3C-2 (Mpro-X12582) (pdb code 7ggg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-D6DE1F3C-2 (Mpro-X12582), PDB code: 7ggg:

Chlorine binding site 1 out of 1 in 7ggg

Go back to Chlorine Binding Sites List in 7ggg
Chlorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-D6DE1F3C-2 (Mpro-X12582)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-D6DE1F3C-2 (Mpro-X12582) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:49.8
occ:0.86
CL A:OVX404 0.0 49.8 0.9
C A:OVX404 1.7 48.9 0.9
C5 A:OVX404 2.7 48.0 0.9
C1 A:OVX404 2.7 48.8 0.9
CB A:ASP187 2.8 30.7 1.0
ND1 A:HIS41 3.1 35.3 1.0
CA A:ASP187 3.3 31.5 1.0
O A:HOH567 3.5 24.4 1.0
CE1 A:HIS41 3.7 35.7 1.0
CG A:HIS41 3.7 33.0 1.0
C A:ASP187 3.8 33.7 1.0
O A:HIS164 3.9 27.4 1.0
SD A:MET165 4.0 47.9 1.0
C4 A:OVX404 4.0 47.3 0.9
C2 A:OVX404 4.0 48.5 0.9
CB A:HIS41 4.0 29.9 1.0
O A:ASP187 4.2 32.9 1.0
CG A:ASP187 4.2 30.0 1.0
CG A:MET165 4.3 39.1 1.0
CB A:HIS164 4.3 24.9 1.0
N A:ARG188 4.5 36.8 1.0
OH A:TYR54 4.5 34.0 1.0
C3 A:OVX404 4.5 48.0 0.9
ND1 A:HIS164 4.5 28.1 1.0
OD2 A:ASP187 4.5 29.5 1.0
C A:HIS164 4.5 26.9 1.0
NE2 A:HIS41 4.6 35.5 1.0
CD2 A:HIS41 4.6 34.4 1.0
CE A:MET49 4.6 64.2 1.0
N A:ASP187 4.6 31.4 1.0
CB A:MET165 4.6 32.8 1.0
CZ A:PHE181 4.7 29.7 1.0
SD A:MET49 4.9 67.6 1.0
CG A:HIS164 4.9 26.3 1.0
CA A:HIS164 5.0 25.1 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Sun Jul 13 01:26:13 2025

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