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Chlorine in PDB 7ggu: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0E5AFE9D-3 (Mpro-X12699)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0E5AFE9D-3 (Mpro-X12699)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0E5AFE9D-3 (Mpro-X12699):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0E5AFE9D-3 (Mpro-X12699), PDB code: 7ggu was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.67 / 2.29
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 112.76, 52.88, 44.85, 90, 102.46, 90
R / Rfree (%) 18.7 / 23.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0E5AFE9D-3 (Mpro-X12699) (pdb code 7ggu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0E5AFE9D-3 (Mpro-X12699), PDB code: 7ggu:

Chlorine binding site 1 out of 1 in 7ggu

Go back to Chlorine Binding Sites List in 7ggu
Chlorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0E5AFE9D-3 (Mpro-X12699)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-0E5AFE9D-3 (Mpro-X12699) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:44.6
occ:0.88
CL A:PJ6404 0.0 44.6 0.9
C7 A:PJ6404 1.7 44.3 0.9
C8 A:PJ6404 2.7 44.1 0.9
C6 A:PJ6404 2.7 44.2 0.9
CB A:ASP187 3.1 51.6 1.0
CA A:ASP187 3.2 50.6 1.0
ND1 A:HIS41 3.6 48.2 1.0
O A:HIS164 3.8 45.4 1.0
C A:ASP187 3.9 52.6 1.0
CB A:HIS164 3.9 43.3 1.0
CB A:MET165 4.0 49.2 1.0
C5 A:PJ6404 4.0 44.4 0.9
C9 A:PJ6404 4.0 43.9 0.9
O A:HOH529 4.0 36.7 1.0
CE1 A:HIS41 4.1 48.7 1.0
SD A:MET165 4.1 57.9 1.0
C A:HIS164 4.1 45.2 1.0
CG A:MET165 4.2 52.4 1.0
CZ A:PHE181 4.2 41.0 1.0
CE A:MET49 4.3 52.0 1.0
O A:ASP187 4.3 53.6 1.0
N A:ASP187 4.5 49.5 1.0
CG A:HIS41 4.5 46.2 1.0
C4 A:PJ6404 4.5 44.4 0.9
N A:MET165 4.5 46.5 1.0
N A:ARG188 4.5 53.5 1.0
CG A:ASP187 4.5 56.2 1.0
CA A:MET165 4.5 48.2 1.0
CA A:HIS164 4.6 43.3 1.0
O A:VAL186 4.7 48.8 1.0
ND1 A:HIS164 4.7 45.2 1.0
CG A:HIS164 4.8 44.2 1.0
CB A:HIS41 4.8 44.0 1.0
CE2 A:PHE181 4.9 41.4 1.0
C A:VAL186 5.0 48.8 1.0
OD2 A:ASP187 5.0 56.9 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Sun Jul 13 01:27:05 2025

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