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Chlorine in PDB 7gi0: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-92E193AE-1 (Mpro-P0034)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-92E193AE-1 (Mpro-P0034)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-92E193AE-1 (Mpro-P0034):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-92E193AE-1 (Mpro-P0034), PDB code: 7gi0 was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.44 / 1.58
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.33, 99.11, 103.53, 90, 90, 90
R / Rfree (%) 21.9 / 25.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-92E193AE-1 (Mpro-P0034) (pdb code 7gi0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-92E193AE-1 (Mpro-P0034), PDB code: 7gi0:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7gi0

Go back to Chlorine Binding Sites List in 7gi0
Chlorine binding site 1 out of 3 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-92E193AE-1 (Mpro-P0034)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-92E193AE-1 (Mpro-P0034) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:30.3
occ:1.00
CL A:OQL403 0.0 30.3 1.0
C A:OQL403 1.7 30.4 1.0
C18 A:OQL403 2.7 29.7 1.0
C1 A:OQL403 2.7 31.0 1.0
CB A:ASP187 3.4 25.5 1.0
CD2 A:HIS41 3.4 28.3 1.0
CA A:ASP187 3.4 26.0 1.0
O A:HIS164 3.7 24.6 1.0
CB A:MET165 3.8 27.4 1.0
SD A:MET165 3.9 39.2 1.0
NE2 A:HIS41 3.9 29.2 1.0
C2 A:OQL403 4.0 31.3 1.0
C17 A:OQL403 4.0 29.8 1.0
C A:ASP187 4.0 27.4 1.0
CB A:HIS164 4.1 21.1 1.0
CG A:MET165 4.1 30.9 1.0
CE A:MET49 4.1 39.3 1.0
C A:HIS164 4.2 22.9 1.0
CG A:HIS41 4.2 27.4 1.0
O A:HOH543 4.4 24.0 1.0
N A:ARG188 4.4 28.0 1.0
C3 A:OQL403 4.5 31.1 1.0
O A:ASP187 4.6 27.3 1.0
CD2 A:HIS164 4.7 21.6 1.0
N A:ASP187 4.7 25.9 1.0
N A:MET165 4.7 23.1 1.0
CA A:HIS164 4.7 21.3 1.0
CZ A:PHE181 4.7 24.4 1.0
CB A:HIS41 4.7 25.3 1.0
CA A:MET165 4.8 24.7 1.0
CG A:HIS164 4.8 21.7 1.0
O A:VAL186 4.8 26.9 1.0
CG A:ASP187 4.8 25.6 1.0
CE1 A:HIS41 4.8 29.3 1.0

Chlorine binding site 2 out of 3 in 7gi0

Go back to Chlorine Binding Sites List in 7gi0
Chlorine binding site 2 out of 3 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-92E193AE-1 (Mpro-P0034)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-92E193AE-1 (Mpro-P0034) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl411

b:21.9
occ:1.00
NE2 A:GLN110 3.2 22.8 1.0
N A:GLN107 3.2 22.4 1.0
CA A:ILE106 3.7 21.5 1.0
CB A:GLN110 3.8 19.4 1.0
CB A:ILE106 3.9 21.6 1.0
CG A:GLN110 3.9 19.7 1.0
C A:ILE106 3.9 22.2 1.0
CB A:GLN107 4.0 25.6 1.0
CD A:GLN110 4.0 23.7 1.0
CG A:GLN107 4.1 30.2 1.0
CA A:GLN107 4.2 23.0 1.0
CG2 A:ILE106 4.2 22.2 1.0
O A:HOH522 4.4 40.8 1.0
O A:GLN107 4.5 23.3 1.0
O A:HOH728 4.6 32.5 1.0
O A:ARG105 4.8 23.2 1.0
C A:GLN107 4.9 23.5 1.0
N A:ILE106 5.0 21.5 1.0

Chlorine binding site 3 out of 3 in 7gi0

Go back to Chlorine Binding Sites List in 7gi0
Chlorine binding site 3 out of 3 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-92E193AE-1 (Mpro-P0034)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-92E193AE-1 (Mpro-P0034) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:27.6
occ:1.00
CL B:OQL404 0.0 27.6 1.0
C B:OQL404 1.7 27.5 1.0
C18 B:OQL404 2.7 27.6 1.0
C1 B:OQL404 2.7 27.8 1.0
CB B:ASP187 3.4 23.5 1.0
CD2 B:HIS41 3.5 27.9 1.0
CA B:ASP187 3.5 24.2 1.0
O B:HIS164 3.6 23.1 1.0
CB B:MET165 3.8 23.2 1.0
C2 B:OQL404 4.0 28.4 1.0
SD B:MET165 4.0 33.5 1.0
NE2 B:HIS41 4.0 29.6 1.0
C17 B:OQL404 4.0 27.8 1.0
CB B:HIS164 4.0 20.2 1.0
C B:HIS164 4.1 21.6 1.0
C B:ASP187 4.1 25.4 1.0
CE B:MET49 4.2 32.6 1.0
CG B:MET165 4.2 27.9 1.0
CG B:HIS41 4.3 27.2 1.0
N B:ARG188 4.4 26.5 1.0
O B:HOH548 4.5 23.3 1.0
C3 B:OQL404 4.5 28.7 1.0
CA B:MET165 4.6 21.7 1.0
N B:MET165 4.6 21.0 1.0
CZ B:PHE181 4.7 22.9 1.0
CA B:HIS164 4.7 20.6 1.0
CD2 B:HIS164 4.7 21.6 1.0
O B:VAL186 4.7 23.4 1.0
N B:ASP187 4.7 23.3 1.0
O B:ASP187 4.8 25.4 1.0
CG B:HIS164 4.8 21.2 1.0
CB B:HIS41 4.8 24.9 1.0
CG B:ASP187 4.8 25.1 1.0
CE1 B:HIS41 4.9 30.0 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Sun Jul 13 01:30:12 2025

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