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Chlorine in PDB 7gjn: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-37AAC4BD-4 (Mpro-P0602)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-37AAC4BD-4 (Mpro-P0602)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-37AAC4BD-4 (Mpro-P0602):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-37AAC4BD-4 (Mpro-P0602), PDB code: 7gjn was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.36 / 2.06
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.3, 98.91, 103.14, 90, 90, 90
R / Rfree (%) 23.4 / 27.9

Other elements in 7gjn:

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-37AAC4BD-4 (Mpro-P0602) also contains other interesting chemical elements:

Fluorine (F) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-37AAC4BD-4 (Mpro-P0602) (pdb code 7gjn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-37AAC4BD-4 (Mpro-P0602), PDB code: 7gjn:

Chlorine binding site 1 out of 1 in 7gjn

Go back to Chlorine Binding Sites List in 7gjn
Chlorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-37AAC4BD-4 (Mpro-P0602)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edj-Med-37AAC4BD-4 (Mpro-P0602) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl405

b:69.4
occ:1.00
O B:ILE249 3.8 48.8 1.0
CE1 B:PHE294 3.9 47.3 1.0
CD1 B:PHE294 3.9 46.2 1.0
CG B:PRO252 3.9 50.1 1.0
CG2 B:VAL297 3.9 45.6 1.0
CB B:PRO252 4.4 49.2 1.0
CD B:PRO252 4.4 48.6 1.0
CZ B:PHE294 4.4 47.0 1.0
CG B:PHE294 4.5 44.4 1.0
O B:PRO293 4.6 38.0 1.0
CB B:VAL297 4.7 45.0 1.0
C B:PRO293 4.8 37.9 1.0
CA B:PHE294 4.8 39.4 1.0
N B:PHE294 4.9 38.1 1.0
CB B:PRO293 5.0 37.5 1.0
CG2 B:ILE249 5.0 49.8 1.0
CE2 B:PHE294 5.0 47.3 1.0
C B:ILE249 5.0 48.8 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Sun Jul 13 01:40:09 2025

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