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Chlorine in PDB 7hkn: Group Deposition For Crystallographic Fragment Screening of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 -- Crystal Structure of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 in Complex with Z952016136 (DNV2_NS5A-X0323)

Protein crystallography data

The structure of Group Deposition For Crystallographic Fragment Screening of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 -- Crystal Structure of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 in Complex with Z952016136 (DNV2_NS5A-X0323), PDB code: 7hkn was solved by M.Saini, A.Chopra, J.C.Aschenbrenner, P.G.Marples, B.H.Balcomb, D.Fearon, F.Von Delft, F.X.Ruiz, E.Arnold, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.13 / 2.43
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 82.525, 117.36, 148.89, 90, 90, 90
R / Rfree (%) 19.9 / 28.1

Other elements in 7hkn:

The structure of Group Deposition For Crystallographic Fragment Screening of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 -- Crystal Structure of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 in Complex with Z952016136 (DNV2_NS5A-X0323) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition For Crystallographic Fragment Screening of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 -- Crystal Structure of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 in Complex with Z952016136 (DNV2_NS5A-X0323) (pdb code 7hkn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Group Deposition For Crystallographic Fragment Screening of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 -- Crystal Structure of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 in Complex with Z952016136 (DNV2_NS5A-X0323), PDB code: 7hkn:

Chlorine binding site 1 out of 1 in 7hkn

Go back to Chlorine Binding Sites List in 7hkn
Chlorine binding site 1 out of 1 in the Group Deposition For Crystallographic Fragment Screening of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 -- Crystal Structure of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 in Complex with Z952016136 (DNV2_NS5A-X0323)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition For Crystallographic Fragment Screening of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 -- Crystal Structure of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 in Complex with Z952016136 (DNV2_NS5A-X0323) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1012

b:142.3
occ:0.88
CL1 A:KBU1012 0.0 142.3 0.9
C1 A:KBU1012 1.7 142.6 0.9
C2 A:KBU1012 2.7 138.9 0.9
C7 A:KBU1012 2.7 142.9 0.9
O A:HOH1420 3.0 55.0 0.9
N2 A:KBU1012 3.2 141.4 0.9
OE2 A:GLU379 3.7 104.2 0.9
C3 A:KBU1012 4.0 141.7 0.9
C5 A:KBU1012 4.0 140.0 0.9
O A:HOH1374 4.1 43.5 0.9
CD A:GLU379 4.3 96.7 0.9
OE1 A:GLU379 4.5 96.2 0.9
C4 A:KBU1012 4.5 140.0 0.9
C6 A:KBU1012 4.5 140.0 0.9
O A:HOH1462 4.6 47.8 0.9
NZ A:LYS383 4.7 91.2 0.9
CE A:LYS383 4.7 89.1 0.9
O A:HOH1390 4.8 50.6 0.9
N1 A:KBU1012 5.0 139.4 0.9

Reference:

M.Saini, A.Chopra, J.C.Aschenbrenner, P.G.Marples, B.H.Balcomb, D.Fearon, F.Von Delft, F.X.Ruiz, E.Arnold. Group Deposition For Crystallographic Fragment Screening of the NS5 Rna-Dependent Rna Polymerase From Dengue Virus Serotype 2 To Be Published.
Page generated: Sun Jul 13 02:53:06 2025

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