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Chlorine in PDB 7jm6: Structure of Chicken Clc-7

Other elements in 7jm6:

The structure of Structure of Chicken Clc-7 also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Chicken Clc-7 (pdb code 7jm6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Structure of Chicken Clc-7, PDB code: 7jm6:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 7jm6

Go back to Chlorine Binding Sites List in 7jm6
Chlorine binding site 1 out of 6 in the Structure of Chicken Clc-7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Chicken Clc-7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl903

b:32.6
occ:1.00
H A:VAL508 2.1 28.8 1.0
HH A:TYR597 2.4 28.7 1.0
HG A:SER199 2.7 29.0 1.0
HG12 A:VAL508 2.7 28.8 1.0
HB3 A:SER199 2.8 29.0 1.0
HA2 A:GLY507 2.8 30.2 1.0
N A:VAL508 2.9 28.8 1.0
OH A:TYR597 3.0 28.7 1.0
HD12 A:ILE201 3.0 28.6 1.0
HA3 A:GLY507 3.2 30.2 1.0
HD2 A:PHE509 3.2 29.8 1.0
OG A:SER199 3.3 29.0 1.0
H A:PHE509 3.3 29.8 1.0
CA A:GLY507 3.3 30.2 1.0
CB A:SER199 3.4 29.0 1.0
HA3 A:GLY243 3.4 31.4 1.0
HB2 A:SER199 3.5 29.0 1.0
C A:GLY507 3.6 30.2 1.0
CG1 A:VAL508 3.7 28.8 1.0
CD1 A:ILE201 3.8 28.6 1.0
N A:PHE509 3.9 29.8 1.0
HD11 A:ILE201 4.0 28.6 1.0
CA A:VAL508 4.0 28.8 1.0
HD13 A:ILE201 4.0 28.6 1.0
HE1 A:TYR597 4.0 28.7 1.0
CD2 A:PHE509 4.1 29.8 1.0
HE1 A:TYR500 4.1 29.6 1.0
HG13 A:VAL508 4.1 28.8 1.0
CZ A:TYR597 4.1 28.7 1.0
HG11 A:VAL508 4.1 28.8 1.0
HA2 A:GLY243 4.2 31.4 1.0
HB2 A:PHE509 4.2 29.8 1.0
CA A:GLY243 4.2 31.4 1.0
CB A:VAL508 4.2 28.8 1.0
HB A:VAL508 4.3 28.8 1.0
C A:VAL508 4.4 28.8 1.0
CE1 A:TYR597 4.5 28.7 1.0
CL A:CL904 4.5 33.1 1.0
H A:GLY243 4.6 31.4 1.0
HE2 A:PHE509 4.6 29.8 1.0
HB A:ILE201 4.6 28.6 1.0
N A:GLY507 4.7 30.2 1.0
CA A:SER199 4.8 29.0 1.0
HA A:VAL508 4.8 28.8 1.0
CE2 A:PHE509 4.8 29.8 1.0
CB A:PHE509 4.8 29.8 1.0
O A:ALA506 4.9 30.5 1.0
O A:GLY507 4.9 30.2 1.0
N A:GLY243 4.9 31.4 1.0
CG A:PHE509 4.9 29.8 1.0
CA A:PHE509 4.9 29.8 1.0
HA A:SER199 4.9 29.0 1.0

Chlorine binding site 2 out of 6 in 7jm6

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Chlorine binding site 2 out of 6 in the Structure of Chicken Clc-7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Chicken Clc-7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl904

b:33.1
occ:1.00
H A:GLY243 2.7 31.4 1.0
HB2 A:GLU242 2.8 32.0 1.0
HB2 A:PHE509 2.8 29.8 1.0
H A:GLU242 2.9 32.0 1.0
H A:ILE510 2.9 31.4 1.0
HA3 A:GLY507 2.9 30.2 1.0
H A:PHE509 2.9 29.8 1.0
HG12 A:ILE510 2.9 31.4 1.0
HA3 A:GLY240 3.0 31.9 1.0
N A:GLY243 3.5 31.4 1.0
N A:PHE509 3.5 29.8 1.0
N A:GLU242 3.5 32.0 1.0
CB A:GLU242 3.6 32.0 1.0
CB A:PHE509 3.6 29.8 1.0
CA A:GLY507 3.7 30.2 1.0
C A:GLY240 3.7 31.9 1.0
N A:ILE510 3.7 31.4 1.0
C A:GLY507 3.7 30.2 1.0
HG2 A:GLU242 3.7 32.0 1.0
CA A:GLY240 3.7 31.9 1.0
CG1 A:ILE510 3.8 31.4 1.0
O A:GLY240 3.9 31.9 1.0
HB3 A:PHE509 3.9 29.8 1.0
N A:VAL508 3.9 28.8 1.0
H A:VAL508 3.9 28.8 1.0
CA A:GLU242 3.9 32.0 1.0
CA A:PHE509 4.0 29.8 1.0
H A:GLY240 4.1 31.9 1.0
CG A:GLU242 4.1 32.0 1.0
HA3 A:GLY243 4.1 31.4 1.0
HB A:ILE510 4.1 31.4 1.0
HD2 A:PRO511 4.1 30.0 1.0
C A:GLU242 4.2 32.0 1.0
N A:LYS241 4.2 32.3 1.0
O A:GLY507 4.2 30.2 1.0
H A:GLY507 4.2 30.2 1.0
HG3 A:GLU242 4.3 32.0 1.0
HG13 A:ILE510 4.3 31.4 1.0
HD3 A:PRO511 4.3 30.0 1.0
HD13 A:ILE510 4.3 31.4 1.0
HB3 A:GLU242 4.3 32.0 1.0
N A:GLY240 4.3 31.9 1.0
CA A:GLY243 4.3 31.4 1.0
HA2 A:GLY507 4.3 30.2 1.0
C A:PHE509 4.4 29.8 1.0
H A:LYS241 4.4 32.3 1.0
N A:GLY507 4.4 30.2 1.0
CB A:ILE510 4.4 31.4 1.0
C A:VAL508 4.5 28.8 1.0
HA2 A:GLY240 4.5 31.9 1.0
CL A:CL903 4.5 32.6 1.0
C A:LYS241 4.6 32.3 1.0
CD1 A:ILE510 4.6 31.4 1.0
HA2 A:GLY243 4.6 31.4 1.0
CD A:PRO511 4.7 30.0 1.0
CA A:ILE510 4.7 31.4 1.0
CA A:VAL508 4.7 28.8 1.0
HD3 A:PRO244 4.8 30.4 1.0
CG A:PHE509 4.8 29.8 1.0
HD2 A:PHE509 4.9 29.8 1.0
HA A:GLU242 4.9 32.0 1.0
CA A:LYS241 4.9 32.3 1.0
HA A:PHE509 5.0 29.8 1.0
HD11 A:ILE510 5.0 31.4 1.0
HA A:VAL508 5.0 28.8 1.0

Chlorine binding site 3 out of 6 in 7jm6

Go back to Chlorine Binding Sites List in 7jm6
Chlorine binding site 3 out of 6 in the Structure of Chicken Clc-7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Chicken Clc-7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl905

b:34.2
occ:1.00
H A:GLY200 2.1 29.0 1.0
HA3 A:GLY198 2.8 29.6 1.0
OE1 A:GLN203 2.8 28.9 1.0
N A:GLY200 2.9 29.0 1.0
HA2 A:GLY200 3.0 29.0 1.0
O A:ALA197 3.0 31.3 1.0
HD2 A:PRO202 3.1 28.9 1.0
H A:SER199 3.3 29.0 1.0
CA A:GLY200 3.4 29.0 1.0
N A:SER199 3.5 29.0 1.0
HZ2 A:LYS225 3.6 29.9 1.0
CA A:GLY198 3.6 29.6 1.0
C A:GLY198 3.6 29.6 1.0
O A:HOH1013 3.7 26.8 1.0
HG2 A:PRO202 3.7 28.9 1.0
CD A:GLN203 3.8 28.9 1.0
HE22 A:GLN203 3.9 28.9 1.0
HZ3 A:LYS225 4.0 29.9 1.0
C A:SER199 4.0 29.0 1.0
CD A:PRO202 4.0 28.9 1.0
C A:ALA197 4.0 31.3 1.0
C A:GLY200 4.2 29.0 1.0
NZ A:LYS225 4.2 29.9 1.0
HA3 A:GLY200 4.2 29.0 1.0
NE2 A:GLN203 4.3 28.9 1.0
N A:GLY198 4.3 29.6 1.0
HA2 A:GLY198 4.3 29.6 1.0
CA A:SER199 4.3 29.0 1.0
CG A:PRO202 4.3 28.9 1.0
H A:ILE201 4.3 28.6 1.0
O A:GLY198 4.4 29.6 1.0
H A:GLN203 4.4 28.9 1.0
HD3 A:PRO202 4.4 28.9 1.0
N A:ILE201 4.5 28.6 1.0
HZ1 A:LYS225 4.5 29.9 1.0
OG A:SER199 4.6 29.0 1.0
HB2 A:PRO202 4.6 28.9 1.0
HB2 A:GLN203 4.7 28.9 1.0
O A:GLY200 4.9 29.0 1.0
O A:VAL195 5.0 31.8 1.0
N A:PRO202 5.0 28.9 1.0

Chlorine binding site 4 out of 6 in 7jm6

Go back to Chlorine Binding Sites List in 7jm6
Chlorine binding site 4 out of 6 in the Structure of Chicken Clc-7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of Chicken Clc-7 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl903

b:32.6
occ:1.00
H B:VAL508 2.1 28.8 1.0
HH B:TYR597 2.4 28.7 1.0
HG B:SER199 2.7 29.0 1.0
HG12 B:VAL508 2.7 28.8 1.0
HB3 B:SER199 2.8 29.0 1.0
HA2 B:GLY507 2.8 30.2 1.0
N B:VAL508 2.9 28.8 1.0
OH B:TYR597 3.0 28.7 1.0
HD12 B:ILE201 3.0 28.6 1.0
HA3 B:GLY507 3.2 30.2 1.0
HD2 B:PHE509 3.2 29.8 1.0
OG B:SER199 3.3 29.0 1.0
H B:PHE509 3.3 29.8 1.0
CA B:GLY507 3.3 30.2 1.0
CB B:SER199 3.4 29.0 1.0
HA3 B:GLY243 3.4 31.4 1.0
HB2 B:SER199 3.5 29.0 1.0
C B:GLY507 3.6 30.2 1.0
CG1 B:VAL508 3.7 28.8 1.0
CD1 B:ILE201 3.8 28.6 1.0
N B:PHE509 3.9 29.8 1.0
HD11 B:ILE201 4.0 28.6 1.0
CA B:VAL508 4.0 28.8 1.0
HD13 B:ILE201 4.0 28.6 1.0
HE1 B:TYR597 4.0 28.7 1.0
CD2 B:PHE509 4.1 29.8 1.0
HE1 B:TYR500 4.1 29.6 1.0
HG13 B:VAL508 4.1 28.8 1.0
CZ B:TYR597 4.1 28.7 1.0
HG11 B:VAL508 4.1 28.8 1.0
HA2 B:GLY243 4.2 31.4 1.0
HB2 B:PHE509 4.2 29.8 1.0
CA B:GLY243 4.2 31.4 1.0
CB B:VAL508 4.2 28.8 1.0
HB B:VAL508 4.3 28.8 1.0
C B:VAL508 4.4 28.8 1.0
CE1 B:TYR597 4.5 28.7 1.0
CL B:CL904 4.5 33.1 1.0
H B:GLY243 4.6 31.4 1.0
HE2 B:PHE509 4.6 29.8 1.0
HB B:ILE201 4.6 28.6 1.0
N B:GLY507 4.7 30.2 1.0
CA B:SER199 4.8 29.0 1.0
HA B:VAL508 4.8 28.8 1.0
CE2 B:PHE509 4.8 29.8 1.0
CB B:PHE509 4.8 29.8 1.0
O B:ALA506 4.9 30.5 1.0
O B:GLY507 4.9 30.2 1.0
N B:GLY243 4.9 31.4 1.0
CG B:PHE509 4.9 29.8 1.0
CA B:PHE509 4.9 29.8 1.0
HA B:SER199 4.9 29.0 1.0

Chlorine binding site 5 out of 6 in 7jm6

Go back to Chlorine Binding Sites List in 7jm6
Chlorine binding site 5 out of 6 in the Structure of Chicken Clc-7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of Chicken Clc-7 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl904

b:33.1
occ:1.00
H B:GLY243 2.7 31.4 1.0
HB2 B:GLU242 2.8 32.0 1.0
HB2 B:PHE509 2.8 29.8 1.0
H B:GLU242 2.9 32.0 1.0
H B:ILE510 2.9 31.4 1.0
HA3 B:GLY507 2.9 30.2 1.0
HG12 B:ILE510 2.9 31.4 1.0
H B:PHE509 2.9 29.8 1.0
HA3 B:GLY240 3.0 31.9 1.0
N B:GLY243 3.5 31.4 1.0
N B:PHE509 3.5 29.8 1.0
N B:GLU242 3.5 32.0 1.0
CB B:GLU242 3.6 32.0 1.0
CB B:PHE509 3.6 29.8 1.0
CA B:GLY507 3.7 30.2 1.0
C B:GLY240 3.7 31.9 1.0
N B:ILE510 3.7 31.4 1.0
C B:GLY507 3.7 30.2 1.0
HG2 B:GLU242 3.7 32.0 1.0
CA B:GLY240 3.7 31.9 1.0
CG1 B:ILE510 3.8 31.4 1.0
O B:GLY240 3.9 31.9 1.0
HB3 B:PHE509 3.9 29.8 1.0
N B:VAL508 3.9 28.8 1.0
H B:VAL508 3.9 28.8 1.0
CA B:GLU242 3.9 32.0 1.0
CA B:PHE509 4.0 29.8 1.0
H B:GLY240 4.1 31.9 1.0
CG B:GLU242 4.1 32.0 1.0
HA3 B:GLY243 4.1 31.4 1.0
HB B:ILE510 4.1 31.4 1.0
HD2 B:PRO511 4.1 30.0 1.0
C B:GLU242 4.2 32.0 1.0
N B:LYS241 4.2 32.3 1.0
O B:GLY507 4.2 30.2 1.0
H B:GLY507 4.2 30.2 1.0
HG3 B:GLU242 4.3 32.0 1.0
HG13 B:ILE510 4.3 31.4 1.0
HD3 B:PRO511 4.3 30.0 1.0
HD13 B:ILE510 4.3 31.4 1.0
HB3 B:GLU242 4.3 32.0 1.0
N B:GLY240 4.3 31.9 1.0
CA B:GLY243 4.3 31.4 1.0
HA2 B:GLY507 4.3 30.2 1.0
C B:PHE509 4.4 29.8 1.0
H B:LYS241 4.4 32.3 1.0
N B:GLY507 4.4 30.2 1.0
CB B:ILE510 4.4 31.4 1.0
C B:VAL508 4.5 28.8 1.0
HA2 B:GLY240 4.5 31.9 1.0
CL B:CL903 4.5 32.6 1.0
C B:LYS241 4.6 32.3 1.0
CD1 B:ILE510 4.6 31.4 1.0
HA2 B:GLY243 4.6 31.4 1.0
CD B:PRO511 4.7 30.0 1.0
CA B:ILE510 4.7 31.4 1.0
CA B:VAL508 4.7 28.8 1.0
HD3 B:PRO244 4.8 30.4 1.0
CG B:PHE509 4.8 29.8 1.0
HD2 B:PHE509 4.9 29.8 1.0
HA B:GLU242 4.9 32.0 1.0
CA B:LYS241 4.9 32.3 1.0
HA B:PHE509 5.0 29.8 1.0
HD11 B:ILE510 5.0 31.4 1.0
HA B:VAL508 5.0 28.8 1.0

Chlorine binding site 6 out of 6 in 7jm6

Go back to Chlorine Binding Sites List in 7jm6
Chlorine binding site 6 out of 6 in the Structure of Chicken Clc-7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of Chicken Clc-7 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl905

b:34.2
occ:1.00
H B:GLY200 2.1 29.0 1.0
HA3 B:GLY198 2.8 29.6 1.0
OE1 B:GLN203 2.8 28.9 1.0
N B:GLY200 2.9 29.0 1.0
HA2 B:GLY200 3.0 29.0 1.0
O B:ALA197 3.0 31.3 1.0
HD2 B:PRO202 3.1 28.9 1.0
H B:SER199 3.3 29.0 1.0
CA B:GLY200 3.4 29.0 1.0
N B:SER199 3.5 29.0 1.0
CA B:GLY198 3.6 29.6 1.0
HZ2 B:LYS225 3.6 29.9 1.0
C B:GLY198 3.6 29.6 1.0
O B:HOH1013 3.7 26.8 1.0
HG2 B:PRO202 3.7 28.9 1.0
CD B:GLN203 3.9 28.9 1.0
HE22 B:GLN203 3.9 28.9 1.0
HZ3 B:LYS225 4.0 29.9 1.0
C B:SER199 4.0 29.0 1.0
CD B:PRO202 4.0 28.9 1.0
C B:ALA197 4.0 31.3 1.0
C B:GLY200 4.2 29.0 1.0
NZ B:LYS225 4.2 29.9 1.0
HA3 B:GLY200 4.2 29.0 1.0
NE2 B:GLN203 4.3 28.9 1.0
N B:GLY198 4.3 29.6 1.0
HA2 B:GLY198 4.3 29.6 1.0
CA B:SER199 4.3 29.0 1.0
CG B:PRO202 4.3 28.9 1.0
H B:ILE201 4.3 28.6 1.0
O B:GLY198 4.4 29.6 1.0
H B:GLN203 4.4 28.9 1.0
HD3 B:PRO202 4.4 28.9 1.0
N B:ILE201 4.5 28.6 1.0
HZ1 B:LYS225 4.5 29.9 1.0
OG B:SER199 4.5 29.0 1.0
HB2 B:PRO202 4.6 28.9 1.0
HB2 B:GLN203 4.7 28.9 1.0
O B:GLY200 4.9 29.0 1.0
O B:VAL195 5.0 31.8 1.0
N B:PRO202 5.0 28.9 1.0

Reference:

M.Schrecker, J.Korobenko, R.K.Hite. Cryo-Em Structure of the Lysosomal Chloride-Proton Exchanger Clc-7 in Complex with OSTM1. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32749217
DOI: 10.7554/ELIFE.59555
Page generated: Sun Jul 13 02:59:01 2025

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