Chlorine in PDB 7jm6: Structure of Chicken Clc-7

The structure of Structure of Chicken Clc-7 also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Chlorine atom in the Structure of Chicken Clc-7 (pdb code 7jm6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Structure of Chicken Clc-7, PDB code: 7jm6:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in the Structure of Chicken Clc-7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Chicken Clc-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl903 b:32.6 occ:1.00 H A:VAL508 2.1 28.8 1.0 HH A:TYR597 2.4 28.7 1.0 HG A:SER199 2.7 29.0 1.0 HG12 A:VAL508 2.7 28.8 1.0 HB3 A:SER199 2.8 29.0 1.0 HA2 A:GLY507 2.8 30.2 1.0 N A:VAL508 2.9 28.8 1.0 OH A:TYR597 3.0 28.7 1.0 HD12 A:ILE201 3.0 28.6 1.0 HA3 A:GLY507 3.2 30.2 1.0 HD2 A:PHE509 3.2 29.8 1.0 OG A:SER199 3.3 29.0 1.0 H A:PHE509 3.3 29.8 1.0 CA A:GLY507 3.3 30.2 1.0 CB A:SER199 3.4 29.0 1.0 HA3 A:GLY243 3.4 31.4 1.0 HB2 A:SER199 3.5 29.0 1.0 C A:GLY507 3.6 30.2 1.0 CG1 A:VAL508 3.7 28.8 1.0 CD1 A:ILE201 3.8 28.6 1.0 N A:PHE509 3.9 29.8 1.0 HD11 A:ILE201 4.0 28.6 1.0 CA A:VAL508 4.0 28.8 1.0 HD13 A:ILE201 4.0 28.6 1.0 HE1 A:TYR597 4.0 28.7 1.0 CD2 A:PHE509 4.1 29.8 1.0 HE1 A:TYR500 4.1 29.6 1.0 HG13 A:VAL508 4.1 28.8 1.0 CZ A:TYR597 4.1 28.7 1.0 HG11 A:VAL508 4.1 28.8 1.0 HA2 A:GLY243 4.2 31.4 1.0 HB2 A:PHE509 4.2 29.8 1.0 CA A:GLY243 4.2 31.4 1.0 CB A:VAL508 4.2 28.8 1.0 HB A:VAL508 4.3 28.8 1.0 C A:VAL508 4.4 28.8 1.0 CE1 A:TYR597 4.5 28.7 1.0 CL A:CL904 4.5 33.1 1.0 H A:GLY243 4.6 31.4 1.0 HE2 A:PHE509 4.6 29.8 1.0 HB A:ILE201 4.6 28.6 1.0 N A:GLY507 4.7 30.2 1.0 CA A:SER199 4.8 29.0 1.0 HA A:VAL508 4.8 28.8 1.0 CE2 A:PHE509 4.8 29.8 1.0 CB A:PHE509 4.8 29.8 1.0 O A:ALA506 4.9 30.5 1.0 O A:GLY507 4.9 30.2 1.0 N A:GLY243 4.9 31.4 1.0 CG A:PHE509 4.9 29.8 1.0 CA A:PHE509 4.9 29.8 1.0 HA A:SER199 4.9 29.0 1.0

Chlorine binding site 2 out of 6 in the Structure of Chicken Clc-7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Chicken Clc-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl904 b:33.1 occ:1.00 H A:GLY243 2.7 31.4 1.0 HB2 A:GLU242 2.8 32.0 1.0 HB2 A:PHE509 2.8 29.8 1.0 H A:GLU242 2.9 32.0 1.0 H A:ILE510 2.9 31.4 1.0 HA3 A:GLY507 2.9 30.2 1.0 H A:PHE509 2.9 29.8 1.0 HG12 A:ILE510 2.9 31.4 1.0 HA3 A:GLY240 3.0 31.9 1.0 N A:GLY243 3.5 31.4 1.0 N A:PHE509 3.5 29.8 1.0 N A:GLU242 3.5 32.0 1.0 CB A:GLU242 3.6 32.0 1.0 CB A:PHE509 3.6 29.8 1.0 CA A:GLY507 3.7 30.2 1.0 C A:GLY240 3.7 31.9 1.0 N A:ILE510 3.7 31.4 1.0 C A:GLY507 3.7 30.2 1.0 HG2 A:GLU242 3.7 32.0 1.0 CA A:GLY240 3.7 31.9 1.0 CG1 A:ILE510 3.8 31.4 1.0 O A:GLY240 3.9 31.9 1.0 HB3 A:PHE509 3.9 29.8 1.0 N A:VAL508 3.9 28.8 1.0 H A:VAL508 3.9 28.8 1.0 CA A:GLU242 3.9 32.0 1.0 CA A:PHE509 4.0 29.8 1.0 H A:GLY240 4.1 31.9 1.0 CG A:GLU242 4.1 32.0 1.0 HA3 A:GLY243 4.1 31.4 1.0 HB A:ILE510 4.1 31.4 1.0 HD2 A:PRO511 4.1 30.0 1.0 C A:GLU242 4.2 32.0 1.0 N A:LYS241 4.2 32.3 1.0 O A:GLY507 4.2 30.2 1.0 H A:GLY507 4.2 30.2 1.0 HG3 A:GLU242 4.3 32.0 1.0 HG13 A:ILE510 4.3 31.4 1.0 HD3 A:PRO511 4.3 30.0 1.0 HD13 A:ILE510 4.3 31.4 1.0 HB3 A:GLU242 4.3 32.0 1.0 N A:GLY240 4.3 31.9 1.0 CA A:GLY243 4.3 31.4 1.0 HA2 A:GLY507 4.3 30.2 1.0 C A:PHE509 4.4 29.8 1.0 H A:LYS241 4.4 32.3 1.0 N A:GLY507 4.4 30.2 1.0 CB A:ILE510 4.4 31.4 1.0 C A:VAL508 4.5 28.8 1.0 HA2 A:GLY240 4.5 31.9 1.0 CL A:CL903 4.5 32.6 1.0 C A:LYS241 4.6 32.3 1.0 CD1 A:ILE510 4.6 31.4 1.0 HA2 A:GLY243 4.6 31.4 1.0 CD A:PRO511 4.7 30.0 1.0 CA A:ILE510 4.7 31.4 1.0 CA A:VAL508 4.7 28.8 1.0 HD3 A:PRO244 4.8 30.4 1.0 CG A:PHE509 4.8 29.8 1.0 HD2 A:PHE509 4.9 29.8 1.0 HA A:GLU242 4.9 32.0 1.0 CA A:LYS241 4.9 32.3 1.0 HA A:PHE509 5.0 29.8 1.0 HD11 A:ILE510 5.0 31.4 1.0 HA A:VAL508 5.0 28.8 1.0

Chlorine binding site 3 out of 6 in the Structure of Chicken Clc-7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Chicken Clc-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl905 b:34.2 occ:1.00 H A:GLY200 2.1 29.0 1.0 HA3 A:GLY198 2.8 29.6 1.0 OE1 A:GLN203 2.8 28.9 1.0 N A:GLY200 2.9 29.0 1.0 HA2 A:GLY200 3.0 29.0 1.0 O A:ALA197 3.0 31.3 1.0 HD2 A:PRO202 3.1 28.9 1.0 H A:SER199 3.3 29.0 1.0 CA A:GLY200 3.4 29.0 1.0 N A:SER199 3.5 29.0 1.0 HZ2 A:LYS225 3.6 29.9 1.0 CA A:GLY198 3.6 29.6 1.0 C A:GLY198 3.6 29.6 1.0 O A:HOH1013 3.7 26.8 1.0 HG2 A:PRO202 3.7 28.9 1.0 CD A:GLN203 3.8 28.9 1.0 HE22 A:GLN203 3.9 28.9 1.0 HZ3 A:LYS225 4.0 29.9 1.0 C A:SER199 4.0 29.0 1.0 CD A:PRO202 4.0 28.9 1.0 C A:ALA197 4.0 31.3 1.0 C A:GLY200 4.2 29.0 1.0 NZ A:LYS225 4.2 29.9 1.0 HA3 A:GLY200 4.2 29.0 1.0 NE2 A:GLN203 4.3 28.9 1.0 N A:GLY198 4.3 29.6 1.0 HA2 A:GLY198 4.3 29.6 1.0 CA A:SER199 4.3 29.0 1.0 CG A:PRO202 4.3 28.9 1.0 H A:ILE201 4.3 28.6 1.0 O A:GLY198 4.4 29.6 1.0 H A:GLN203 4.4 28.9 1.0 HD3 A:PRO202 4.4 28.9 1.0 N A:ILE201 4.5 28.6 1.0 HZ1 A:LYS225 4.5 29.9 1.0 OG A:SER199 4.6 29.0 1.0 HB2 A:PRO202 4.6 28.9 1.0 HB2 A:GLN203 4.7 28.9 1.0 O A:GLY200 4.9 29.0 1.0 O A:VAL195 5.0 31.8 1.0 N A:PRO202 5.0 28.9 1.0

Chlorine binding site 4 out of 6 in the Structure of Chicken Clc-7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of Chicken Clc-7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl903 b:32.6 occ:1.00 H B:VAL508 2.1 28.8 1.0 HH B:TYR597 2.4 28.7 1.0 HG B:SER199 2.7 29.0 1.0 HG12 B:VAL508 2.7 28.8 1.0 HB3 B:SER199 2.8 29.0 1.0 HA2 B:GLY507 2.8 30.2 1.0 N B:VAL508 2.9 28.8 1.0 OH B:TYR597 3.0 28.7 1.0 HD12 B:ILE201 3.0 28.6 1.0 HA3 B:GLY507 3.2 30.2 1.0 HD2 B:PHE509 3.2 29.8 1.0 OG B:SER199 3.3 29.0 1.0 H B:PHE509 3.3 29.8 1.0 CA B:GLY507 3.3 30.2 1.0 CB B:SER199 3.4 29.0 1.0 HA3 B:GLY243 3.4 31.4 1.0 HB2 B:SER199 3.5 29.0 1.0 C B:GLY507 3.6 30.2 1.0 CG1 B:VAL508 3.7 28.8 1.0 CD1 B:ILE201 3.8 28.6 1.0 N B:PHE509 3.9 29.8 1.0 HD11 B:ILE201 4.0 28.6 1.0 CA B:VAL508 4.0 28.8 1.0 HD13 B:ILE201 4.0 28.6 1.0 HE1 B:TYR597 4.0 28.7 1.0 CD2 B:PHE509 4.1 29.8 1.0 HE1 B:TYR500 4.1 29.6 1.0 HG13 B:VAL508 4.1 28.8 1.0 CZ B:TYR597 4.1 28.7 1.0 HG11 B:VAL508 4.1 28.8 1.0 HA2 B:GLY243 4.2 31.4 1.0 HB2 B:PHE509 4.2 29.8 1.0 CA B:GLY243 4.2 31.4 1.0 CB B:VAL508 4.2 28.8 1.0 HB B:VAL508 4.3 28.8 1.0 C B:VAL508 4.4 28.8 1.0 CE1 B:TYR597 4.5 28.7 1.0 CL B:CL904 4.5 33.1 1.0 H B:GLY243 4.6 31.4 1.0 HE2 B:PHE509 4.6 29.8 1.0 HB B:ILE201 4.6 28.6 1.0 N B:GLY507 4.7 30.2 1.0 CA B:SER199 4.8 29.0 1.0 HA B:VAL508 4.8 28.8 1.0 CE2 B:PHE509 4.8 29.8 1.0 CB B:PHE509 4.8 29.8 1.0 O B:ALA506 4.9 30.5 1.0 O B:GLY507 4.9 30.2 1.0 N B:GLY243 4.9 31.4 1.0 CG B:PHE509 4.9 29.8 1.0 CA B:PHE509 4.9 29.8 1.0 HA B:SER199 4.9 29.0 1.0

Chlorine binding site 5 out of 6 in the Structure of Chicken Clc-7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of Chicken Clc-7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl904 b:33.1 occ:1.00 H B:GLY243 2.7 31.4 1.0 HB2 B:GLU242 2.8 32.0 1.0 HB2 B:PHE509 2.8 29.8 1.0 H B:GLU242 2.9 32.0 1.0 H B:ILE510 2.9 31.4 1.0 HA3 B:GLY507 2.9 30.2 1.0 HG12 B:ILE510 2.9 31.4 1.0 H B:PHE509 2.9 29.8 1.0 HA3 B:GLY240 3.0 31.9 1.0 N B:GLY243 3.5 31.4 1.0 N B:PHE509 3.5 29.8 1.0 N B:GLU242 3.5 32.0 1.0 CB B:GLU242 3.6 32.0 1.0 CB B:PHE509 3.6 29.8 1.0 CA B:GLY507 3.7 30.2 1.0 C B:GLY240 3.7 31.9 1.0 N B:ILE510 3.7 31.4 1.0 C B:GLY507 3.7 30.2 1.0 HG2 B:GLU242 3.7 32.0 1.0 CA B:GLY240 3.7 31.9 1.0 CG1 B:ILE510 3.8 31.4 1.0 O B:GLY240 3.9 31.9 1.0 HB3 B:PHE509 3.9 29.8 1.0 N B:VAL508 3.9 28.8 1.0 H B:VAL508 3.9 28.8 1.0 CA B:GLU242 3.9 32.0 1.0 CA B:PHE509 4.0 29.8 1.0 H B:GLY240 4.1 31.9 1.0 CG B:GLU242 4.1 32.0 1.0 HA3 B:GLY243 4.1 31.4 1.0 HB B:ILE510 4.1 31.4 1.0 HD2 B:PRO511 4.1 30.0 1.0 C B:GLU242 4.2 32.0 1.0 N B:LYS241 4.2 32.3 1.0 O B:GLY507 4.2 30.2 1.0 H B:GLY507 4.2 30.2 1.0 HG3 B:GLU242 4.3 32.0 1.0 HG13 B:ILE510 4.3 31.4 1.0 HD3 B:PRO511 4.3 30.0 1.0 HD13 B:ILE510 4.3 31.4 1.0 HB3 B:GLU242 4.3 32.0 1.0 N B:GLY240 4.3 31.9 1.0 CA B:GLY243 4.3 31.4 1.0 HA2 B:GLY507 4.3 30.2 1.0 C B:PHE509 4.4 29.8 1.0 H B:LYS241 4.4 32.3 1.0 N B:GLY507 4.4 30.2 1.0 CB B:ILE510 4.4 31.4 1.0 C B:VAL508 4.5 28.8 1.0 HA2 B:GLY240 4.5 31.9 1.0 CL B:CL903 4.5 32.6 1.0 C B:LYS241 4.6 32.3 1.0 CD1 B:ILE510 4.6 31.4 1.0 HA2 B:GLY243 4.6 31.4 1.0 CD B:PRO511 4.7 30.0 1.0 CA B:ILE510 4.7 31.4 1.0 CA B:VAL508 4.7 28.8 1.0 HD3 B:PRO244 4.8 30.4 1.0 CG B:PHE509 4.8 29.8 1.0 HD2 B:PHE509 4.9 29.8 1.0 HA B:GLU242 4.9 32.0 1.0 CA B:LYS241 4.9 32.3 1.0 HA B:PHE509 5.0 29.8 1.0 HD11 B:ILE510 5.0 31.4 1.0 HA B:VAL508 5.0 28.8 1.0

Chlorine binding site 6 out of 6 in the Structure of Chicken Clc-7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of Chicken Clc-7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl905 b:34.2 occ:1.00 H B:GLY200 2.1 29.0 1.0 HA3 B:GLY198 2.8 29.6 1.0 OE1 B:GLN203 2.8 28.9 1.0 N B:GLY200 2.9 29.0 1.0 HA2 B:GLY200 3.0 29.0 1.0 O B:ALA197 3.0 31.3 1.0 HD2 B:PRO202 3.1 28.9 1.0 H B:SER199 3.3 29.0 1.0 CA B:GLY200 3.4 29.0 1.0 N B:SER199 3.5 29.0 1.0 CA B:GLY198 3.6 29.6 1.0 HZ2 B:LYS225 3.6 29.9 1.0 C B:GLY198 3.6 29.6 1.0 O B:HOH1013 3.7 26.8 1.0 HG2 B:PRO202 3.7 28.9 1.0 CD B:GLN203 3.9 28.9 1.0 HE22 B:GLN203 3.9 28.9 1.0 HZ3 B:LYS225 4.0 29.9 1.0 C B:SER199 4.0 29.0 1.0 CD B:PRO202 4.0 28.9 1.0 C B:ALA197 4.0 31.3 1.0 C B:GLY200 4.2 29.0 1.0 NZ B:LYS225 4.2 29.9 1.0 HA3 B:GLY200 4.2 29.0 1.0 NE2 B:GLN203 4.3 28.9 1.0 N B:GLY198 4.3 29.6 1.0 HA2 B:GLY198 4.3 29.6 1.0 CA B:SER199 4.3 29.0 1.0 CG B:PRO202 4.3 28.9 1.0 H B:ILE201 4.3 28.6 1.0 O B:GLY198 4.4 29.6 1.0 H B:GLN203 4.4 28.9 1.0 HD3 B:PRO202 4.4 28.9 1.0 N B:ILE201 4.5 28.6 1.0 HZ1 B:LYS225 4.5 29.9 1.0 OG B:SER199 4.5 29.0 1.0 HB2 B:PRO202 4.6 28.9 1.0 HB2 B:GLN203 4.7 28.9 1.0 O B:GLY200 4.9 29.0 1.0 O B:VAL195 5.0 31.8 1.0 N B:PRO202 5.0 28.9 1.0

M.Schrecker, J.Korobenko, R.K.Hite. Cryo-Em Structure of the Lysosomal Chloride-Proton Exchanger Clc-7 in Complex with OSTM1. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32749217
DOI: 10.7554/ELIFE.59555