Chlorine in PDB 7k9b: Crystal Structure of Bacillus Halodurans Oapb (Native) at 1.2 A

The structure of Crystal Structure of Bacillus Halodurans Oapb (Native) at 1.2 A, PDB code: 7k9b was solved by Y.Yang, R.R.Breaker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.92 / 1.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	47.918, 34.909, 49.811, 90, 90.24, 90
R / Rfree (%)	12.1 / 15.1

The binding sites of Chlorine atom in the Crystal Structure of Bacillus Halodurans Oapb (Native) at 1.2 A (pdb code 7k9b). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Bacillus Halodurans Oapb (Native) at 1.2 A, PDB code: 7k9b:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Bacillus Halodurans Oapb (Native) at 1.2 A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Bacillus Halodurans Oapb (Native) at 1.2 A within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:17.0 occ:1.00 HH11 A:ARG45 2.4 15.7 0.5 HZ3 A:LYS53 2.5 25.3 1.0 H A:ASP21 2.5 16.7 1.0 O A:HOH305 2.7 35.5 1.0 HD13 A:ILE16 3.0 13.9 1.0 HH21 A:ARG45 3.1 14.3 0.5 HG21 A:ILE16 3.1 15.4 1.0 O A:HOH333 3.1 15.7 1.0 NH1 A:ARG45 3.1 13.1 0.5 HA3 A:GLY19 3.2 20.5 1.0 H A:ARG20 3.2 17.8 1.0 HB2 A:ASP21 3.3 17.5 1.0 HH12 A:ARG45 3.4 15.7 0.5 N A:ASP21 3.4 13.9 1.0 NZ A:LYS53 3.4 21.1 1.0 HB3 A:ARG20 3.4 16.1 1.0 N A:ARG20 3.5 14.8 1.0 HZ1 A:LYS53 3.7 25.3 1.0 HD11 A:ILE39 3.7 15.2 1.0 HZ2 A:LYS53 3.8 25.3 1.0 HD3 A:LYS53 3.8 19.6 1.0 NH2 A:ARG45 3.9 11.9 0.5 C A:GLY19 4.0 16.1 1.0 HE A:ARG45 4.0 14.9 0.5 CD1 A:ILE16 4.0 11.6 1.0 CA A:GLY19 4.0 17.1 1.0 CB A:ASP21 4.0 14.6 1.0 HE A:ARG45 4.1 16.6 0.5 HG2 A:LYS51 4.1 26.6 1.0 O A:HOH384 4.1 19.6 1.0 CG2 A:ILE16 4.1 12.8 1.0 CA A:ASP21 4.2 13.7 1.0 CA A:ARG20 4.2 14.9 1.0 CB A:ARG20 4.2 13.4 1.0 HE2 A:LYS53 4.2 19.2 1.0 CZ A:ARG45 4.2 13.9 0.5 CE A:LYS53 4.3 16.0 1.0 C A:ARG20 4.3 15.0 1.0 OD2 A:ASP21 4.3 17.8 1.0 HG23 A:ILE16 4.3 15.4 1.0 HD11 A:ILE16 4.3 13.9 1.0 HH22 A:ARG45 4.4 14.3 0.5 CG A:ASP21 4.4 14.4 1.0 HA2 A:GLY19 4.4 20.5 1.0 HD12 A:ILE16 4.5 13.9 1.0 CD A:LYS53 4.5 16.3 1.0 NE A:ARG45 4.5 13.8 0.5 HG22 A:ILE16 4.6 15.4 1.0 HG12 A:ILE16 4.6 13.6 1.0 HB2 A:ARG20 4.6 16.1 1.0 C A:ASP21 4.7 14.4 1.0 NE A:ARG45 4.7 12.4 0.5 CD1 A:ILE39 4.7 12.6 1.0 HE A:ARG20 4.7 16.0 1.0 CG1 A:ILE16 4.8 11.4 1.0 O A:HOH350 4.8 41.1 1.0 CZ A:ARG45 4.8 11.7 0.5 O A:GLY19 4.8 16.6 1.0 HE2 A:LYS51 4.8 30.1 1.0 O A:LYS18 4.9 15.3 1.0 HB3 A:ASP21 4.9 17.5 1.0 HD12 A:ILE39 4.9 15.2 1.0 CB A:ILE16 5.0 11.6 1.0 HD13 A:ILE39 5.0 15.2 1.0 H A:ARG22 5.0 19.5 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Bacillus Halodurans Oapb (Native) at 1.2 A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Bacillus Halodurans Oapb (Native) at 1.2 A within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl201 b:11.3 occ:1.00 HZ1 B:LYS53 2.4 15.1 1.0 HH21 B:ARG45 2.5 16.4 1.0 H B:ASP21 2.6 11.7 1.0 HD13 B:ILE16 2.9 13.0 1.0 HG21 B:ILE16 2.9 13.3 1.0 HA3 B:GLY19 3.2 11.9 1.0 H B:ARG20 3.2 10.7 1.0 O B:HOH328 3.2 13.4 1.0 NZ B:LYS53 3.3 12.6 1.0 NH2 B:ARG45 3.3 13.6 1.0 HB2 B:ASP21 3.4 12.5 1.0 N B:ASP21 3.4 9.8 1.0 HH22 B:ARG45 3.5 16.4 1.0 HB3 B:ARG20 3.5 11.2 1.0 N B:ARG20 3.5 8.9 1.0 HZ2 B:LYS53 3.5 15.1 1.0 HZ3 B:LYS53 3.6 15.1 1.0 HD11 B:ILE39 3.6 11.6 1.0 HD3 B:LYS53 3.8 13.3 1.0 CD1 B:ILE16 3.8 10.8 1.0 CG2 B:ILE16 3.8 11.1 1.0 CA B:GLY19 4.0 9.9 1.0 C B:GLY19 4.0 8.5 1.0 HG23 B:ILE16 4.0 13.3 1.0 CB B:ASP21 4.1 10.4 1.0 O B:HOH407 4.1 19.0 1.0 HD11 B:ILE16 4.2 13.0 1.0 HG12 B:ILE16 4.2 12.3 1.0 HE B:ARG45 4.2 18.4 1.0 CA B:ARG20 4.2 9.3 1.0 CB B:ARG20 4.2 9.3 1.0 CE B:LYS53 4.2 11.5 1.0 CA B:ASP21 4.2 9.7 1.0 HE2 B:LYS53 4.2 13.8 1.0 OD2 B:ASP21 4.3 11.6 1.0 C B:ARG20 4.3 9.8 1.0 HA2 B:GLY19 4.4 11.9 1.0 CZ B:ARG45 4.4 13.5 1.0 HD12 B:ILE16 4.4 13.0 1.0 HG2 B:LYS51 4.4 10.7 1.0 CG B:ASP21 4.4 10.6 1.0 HG22 B:ILE16 4.4 13.3 1.0 CG1 B:ILE16 4.4 10.2 1.0 CD B:LYS53 4.5 11.1 1.0 HB2 B:ARG20 4.5 11.2 1.0 CD1 B:ILE39 4.5 9.7 1.0 O B:HOH359 4.6 23.2 1.0 NE B:ARG45 4.7 15.3 1.0 CB B:ILE16 4.7 9.3 1.0 C B:ASP21 4.7 9.9 1.0 HD13 B:ILE39 4.8 11.6 1.0 O B:GLY19 4.8 10.6 1.0 HD12 B:ILE39 4.8 11.6 1.0 HE B:ARG20 4.8 11.4 1.0 O B:LYS18 4.9 9.8 1.0 HB3 B:ASP21 4.9 12.5 1.0 HB B:ILE16 5.0 11.2 1.0 HD2 B:LYS53 5.0 13.3 1.0

Y.Yang, K.A.Harris, D.L.Widner, R.R.Breaker. Structure of A Bacterial Oapb Protein with Its Ole Rna Target Gives Insights Into the Architecture of the Ole Ribonucleoprotein Complex Proc.Natl.Acad.Sci.Usa 2021.
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