Atomistry » Chlorine » PDB 7lrf-7m09 » 7lvw
Atomistry »
  Chlorine »
    PDB 7lrf-7m09 »
      7lvw »

Chlorine in PDB 7lvw: Structure of Rsv F in Complex with Vhh CL184

Protein crystallography data

The structure of Structure of Rsv F in Complex with Vhh CL184, PDB code: 7lvw was solved by C.-L.Hsieh, J.S.Mclellan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.25 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 104.49, 200.56, 134.66, 90, 105.87, 90
R / Rfree (%) 20.1 / 23

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Rsv F in Complex with Vhh CL184 (pdb code 7lvw). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Structure of Rsv F in Complex with Vhh CL184, PDB code: 7lvw:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 7lvw

Go back to Chlorine Binding Sites List in 7lvw
Chlorine binding site 1 out of 5 in the Structure of Rsv F in Complex with Vhh CL184


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Rsv F in Complex with Vhh CL184 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl602

b:28.1
occ:1.00
O A:HOH803 3.2 27.6 1.0
O A:HOH970 3.2 41.0 1.0
O D:HOH786 3.2 25.1 1.0
O A:HOH749 3.2 26.8 1.0
N D:TYR458 3.3 25.6 1.0
NE1 A:TRP52 3.4 26.5 1.0
CD1 A:TRP52 3.7 27.3 1.0
CD1 D:TYR458 3.8 26.7 1.0
CB D:TYR458 3.9 25.5 1.0
CE A:MET370 4.0 28.8 1.0
O A:SER146 4.0 27.6 1.0
CA D:TYR457 4.2 26.4 1.0
CA D:TYR458 4.2 25.0 1.0
C D:TYR457 4.2 26.2 1.0
CG D:TYR458 4.3 26.1 1.0
O D:LEU456 4.4 27.3 1.0
O A:ALA147 4.5 27.2 1.0
O D:TYR458 4.6 23.4 1.0
CE2 A:TRP52 4.6 26.4 1.0
C A:SER146 4.7 27.0 1.0
CA A:ALA147 4.8 27.1 1.0
NH2 A:ARG49 4.8 27.4 1.0
CE1 D:TYR458 4.8 28.1 1.0
C A:ALA147 4.9 27.2 1.0
C D:TYR458 4.9 25.6 1.0

Chlorine binding site 2 out of 5 in 7lvw

Go back to Chlorine Binding Sites List in 7lvw
Chlorine binding site 2 out of 5 in the Structure of Rsv F in Complex with Vhh CL184


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Rsv F in Complex with Vhh CL184 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl603

b:24.4
occ:1.00
O A:HOH852 3.1 20.5 1.0
O B:HOH769 3.2 23.8 1.0
O B:HOH859 3.3 25.1 1.0
NE1 B:TRP52 3.3 23.0 1.0
N A:TYR458 3.4 22.0 1.0
CD1 B:TRP52 3.7 24.2 1.0
CD1 A:TYR458 3.9 23.9 1.0
CB A:TYR458 4.0 22.0 1.0
O B:SER146 4.0 23.9 1.0
CE B:MET370 4.1 25.0 1.0
CA A:TYR457 4.2 22.6 1.0
C A:TYR457 4.2 23.7 1.0
CA A:TYR458 4.2 22.2 1.0
O A:LEU456 4.4 23.6 1.0
CG A:TYR458 4.4 23.6 1.0
O B:ALA147 4.5 25.5 1.0
CE2 B:TRP52 4.6 24.6 1.0
O A:TYR458 4.6 20.8 1.0
CA B:ALA147 4.7 26.7 1.0
C B:SER146 4.7 25.8 1.0
NH2 B:ARG49 4.8 25.5 1.0
C B:ALA147 4.8 25.1 1.0
CB A:TYR457 4.9 22.0 1.0
CE1 A:TYR458 4.9 26.5 1.0
C A:TYR458 5.0 21.8 1.0

Chlorine binding site 3 out of 5 in 7lvw

Go back to Chlorine Binding Sites List in 7lvw
Chlorine binding site 3 out of 5 in the Structure of Rsv F in Complex with Vhh CL184


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Rsv F in Complex with Vhh CL184 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl601

b:31.6
occ:1.00
O B:HOH839 3.1 23.4 1.0
O D:HOH783 3.3 27.6 1.0
N B:TYR458 3.3 26.0 1.0
NE1 D:TRP52 3.4 26.8 1.0
O B:HOH853 3.4 28.1 1.0
CD1 D:TRP52 3.8 27.6 1.0
CB B:TYR458 3.8 26.9 1.0
CD1 B:TYR458 3.9 28.1 1.0
O D:SER146 4.0 28.3 1.0
CE D:MET370 4.0 27.6 1.0
CA B:TYR458 4.1 26.9 1.0
CA B:TYR457 4.2 26.2 1.0
C B:TYR457 4.3 26.9 1.0
O B:LEU456 4.3 27.3 1.0
CG B:TYR458 4.4 27.2 1.0
O D:ALA147 4.5 27.8 1.0
O B:TYR458 4.6 22.8 1.0
C D:SER146 4.6 28.0 1.0
CE2 D:TRP52 4.7 27.6 1.0
CA D:ALA147 4.7 28.5 1.0
C D:ALA147 4.8 27.6 1.0
NH2 D:ARG49 4.9 26.8 1.0
C B:TYR458 4.9 26.0 1.0
CE1 B:TYR458 5.0 29.4 1.0

Chlorine binding site 4 out of 5 in 7lvw

Go back to Chlorine Binding Sites List in 7lvw
Chlorine binding site 4 out of 5 in the Structure of Rsv F in Complex with Vhh CL184


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of Rsv F in Complex with Vhh CL184 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl601

b:28.9
occ:1.00
O E:HOH811 3.1 29.2 1.0
O F:HOH834 3.2 33.3 1.0
O E:HOH828 3.2 32.4 1.0
NE1 F:TRP52 3.3 32.4 1.0
N E:TYR458 3.3 28.7 1.0
CD1 F:TRP52 3.7 33.1 1.0
CD1 E:TYR458 3.9 30.7 1.0
CE F:MET370 3.9 31.8 1.0
CB E:TYR458 4.0 29.4 1.0
O F:SER146 4.0 32.5 1.0
CA E:TYR457 4.1 29.8 1.0
C E:TYR457 4.2 30.6 1.0
CA E:TYR458 4.2 30.0 1.0
O E:LEU456 4.4 29.1 1.0
CG E:TYR458 4.4 30.8 1.0
CE2 F:TRP52 4.6 33.6 1.0
O E:TYR458 4.6 26.9 1.0
O F:ALA147 4.7 33.2 1.0
C F:SER146 4.7 33.1 1.0
CA F:ALA147 4.8 34.1 1.0
NH2 F:ARG49 4.8 31.6 1.0
CB E:TYR457 4.8 29.5 1.0
CE1 E:TYR458 4.9 32.6 1.0
C E:TYR458 5.0 28.8 1.0
C F:ALA147 5.0 33.0 1.0

Chlorine binding site 5 out of 5 in 7lvw

Go back to Chlorine Binding Sites List in 7lvw
Chlorine binding site 5 out of 5 in the Structure of Rsv F in Complex with Vhh CL184


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of Rsv F in Complex with Vhh CL184 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl602

b:39.9
occ:1.00
OG1 E:THR423 2.6 31.1 1.0
OG E:SER425 2.7 31.3 1.0
O E:HOH769 2.8 34.3 1.0
C E:THR423 3.2 30.1 1.0
C E:ALA424 3.2 32.3 1.0
N E:SER425 3.2 30.8 1.0
O E:THR423 3.2 28.0 1.0
N E:ALA424 3.3 28.4 1.0
CB E:SER425 3.3 31.5 1.0
CB E:THR423 3.3 30.0 1.0
CA E:ALA424 3.4 29.0 1.0
N E:SER451 3.8 29.4 1.0
O E:ALA424 3.8 31.4 1.0
CA E:SER425 3.8 31.9 1.0
CA E:THR423 3.9 29.9 1.0
CB E:SER451 4.0 30.7 1.0
OG E:SER451 4.1 32.9 1.0
O E:HOH926 4.1 37.2 1.0
O E:THR449 4.2 29.0 1.0
CA E:VAL450 4.3 29.2 1.0
C E:VAL450 4.3 29.4 1.0
CG1 E:ILE431 4.5 34.6 1.0
O E:HOH751 4.5 36.2 1.0
CA E:SER451 4.5 29.8 1.0
OG1 E:THR449 4.5 29.8 1.0
O E:HOH756 4.6 36.0 1.0
N E:THR423 4.7 28.4 1.0
C E:THR449 4.7 29.9 1.0
O E:HOH935 4.7 37.4 1.0
CG2 E:THR423 4.7 31.5 1.0
N E:VAL450 4.8 28.3 1.0
CB E:ALA424 4.9 30.1 1.0

Reference:

I.Rossey, C.L.Hsieh, K.Sedeyn, M.Ballegeer, B.Schepens, J.S.Mclellan, X.Saelens. A Vulnerable, Membrane-Proximal Site in Human Respiratory Syncytial Virus F Revealed By A Prefusion-Specific Single-Domain Antibody. J.Virol. 2021.
ISSN: ESSN 1098-5514
PubMed: 33692208
DOI: 10.1128/JVI.02279-20
Page generated: Sun Jul 13 03:52:18 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy