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Chlorine in PDB 7lzs: Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029

Protein crystallography data

The structure of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029, PDB code: 7lzs was solved by D.A.Kuntz, G.G.Prive, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.91 / 1.49
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 30.907, 72.425, 54.816, 90, 104.59, 90
R / Rfree (%) 15.6 / 17.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029 (pdb code 7lzs). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029, PDB code: 7lzs:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7lzs

Go back to Chlorine Binding Sites List in 7lzs
Chlorine binding site 1 out of 2 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:20.5
occ:0.96
CL35 A:YJS201 0.0 20.5 1.0
C34 A:YJS201 1.8 17.3 1.0
C36 A:YJS201 2.7 17.0 1.0
C32 A:YJS201 2.7 18.6 1.0
H361 A:YJS201 2.8 20.4 1.0
HB3 A:ASP17 2.9 23.0 1.0
O33 A:YJS201 3.0 19.6 1.0
H331 A:YJS201 3.0 23.6 1.0
HB2 A:ASP17 3.0 23.0 1.0
HG23 A:VAL18 3.2 16.5 1.0
ND1 A:HIS14 3.3 15.4 1.0
CB A:ASP17 3.4 19.2 1.0
HA A:HIS14 3.5 19.6 1.0
HG22 A:VAL18 3.6 16.5 1.0
HE1 A:HIS14 3.7 17.8 1.0
O A:HIS14 3.7 18.0 1.0
CE1 A:HIS14 3.8 14.8 1.0
O A:HOH362 3.8 39.1 1.0
CG2 A:VAL18 3.8 13.7 1.0
H A:VAL18 3.8 17.4 1.0
N A:VAL18 3.9 14.5 1.0
C28 A:YJS201 4.0 17.9 1.0
C26 A:YJS201 4.0 16.1 1.0
C A:ASP17 4.1 16.1 1.0
HA A:VAL18 4.1 15.5 1.0
O A:HOH377 4.2 48.0 1.0
CG A:HIS14 4.3 16.4 1.0
CA A:HIS14 4.3 16.4 1.0
CA A:ASP17 4.3 17.3 1.0
OD2 A:ASP17 4.4 25.2 1.0
CA A:VAL18 4.4 12.9 1.0
CG A:ASP17 4.5 23.2 1.0
C A:HIS14 4.5 16.7 1.0
C27 A:YJS201 4.5 16.2 1.0
HG21 A:VAL18 4.5 16.5 1.0
O A:ASP17 4.6 17.7 1.0
HD22 A:ASN21 4.6 18.7 1.0
H161 A:YJS201 4.7 20.4 1.0
CB A:HIS14 4.7 16.7 1.0
CB A:VAL18 4.7 13.4 1.0
H301 A:YJS201 4.8 24.2 1.0
NE2 A:HIS14 4.8 15.3 1.0
HB2 A:HIS14 4.8 20.0 1.0
HD21 A:ASN21 4.9 18.7 1.0
ND2 A:ASN21 5.0 15.6 1.0
H A:ASP17 5.0 21.1 1.0

Chlorine binding site 2 out of 2 in 7lzs

Go back to Chlorine Binding Sites List in 7lzs
Chlorine binding site 2 out of 2 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:17.0
occ:0.96
CL38 A:YJS201 0.0 17.0 1.0
C37 A:YJS201 1.8 18.9 1.0
H111 A:YJS201 2.5 21.4 1.0
C39 A:YJS201 2.7 20.1 1.0
C10 A:YJS201 2.7 19.1 1.0
HB3 A:ASN21 2.8 16.2 1.0
H391 A:YJS201 2.8 24.1 1.0
HD21 A:LEU25 2.9 19.5 1.0
N11 A:YJS201 3.0 17.8 1.0
HG A:LEU25 3.0 17.8 1.0
HD11 A:LEU25 3.1 19.2 1.0
CG A:LEU25 3.6 14.8 1.0
CD2 A:LEU25 3.6 16.2 1.0
CB A:ASN21 3.7 13.5 1.0
CD1 A:LEU25 3.8 16.0 1.0
O A:ASN21 3.8 14.5 1.0
N40 A:YJS201 4.0 19.4 1.0
HD23 A:LEU25 4.0 19.5 1.0
C09 A:YJS201 4.0 19.4 1.0
HD12 A:LEU25 4.2 19.2 1.0
CG A:ASN21 4.2 15.5 1.0
HA A:ASN21 4.3 16.4 1.0
C A:ASN21 4.3 13.0 1.0
HB2 A:ASN21 4.3 16.2 1.0
C12 A:YJS201 4.3 18.3 1.0
CA A:ASN21 4.3 13.7 1.0
HD22 A:LEU25 4.4 19.5 1.0
HD22 A:ASN21 4.4 18.7 1.0
C08 A:YJS201 4.5 20.3 1.0
H141 A:YJS201 4.5 20.3 1.0
ND2 A:ASN21 4.5 15.6 1.0
HD13 A:LEU25 4.6 19.2 1.0
OD1 A:ASN21 4.7 17.0 1.0
H091 A:YJS201 4.8 23.3 1.0
HB2 A:ARG24 4.9 24.0 1.0
H A:LEU25 5.0 19.2 1.0
C14 A:YJS201 5.0 16.9 1.0

Reference:

D.A.Kuntz, G.G.Prive. Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-11029 To Be Published.
Page generated: Sun Jul 13 03:56:42 2025

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