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Chlorine in PDB 7ocz: Crystal Structure of the Pid-3 Rrm Domain

Protein crystallography data

The structure of Crystal Structure of the Pid-3 Rrm Domain, PDB code: 7ocz was solved by J.Basquin, R.F.Ketting, S.Falk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.48 / 1.82
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 43.294, 43.294, 158.181, 90, 90, 120
R / Rfree (%) 18.2 / 21

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Pid-3 Rrm Domain (pdb code 7ocz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Pid-3 Rrm Domain, PDB code: 7ocz:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7ocz

Go back to Chlorine Binding Sites List in 7ocz
Chlorine binding site 1 out of 2 in the Crystal Structure of the Pid-3 Rrm Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Pid-3 Rrm Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl101

b:50.1
occ:1.00
O A:HOH242 2.6 38.6 1.0
OG A:SER48 3.3 26.5 1.0
N A:GLN47 3.3 22.2 1.0
N A:ALA46 3.6 23.1 1.0
CB A:SER48 3.6 23.8 1.0
N A:SER48 3.7 22.9 1.0
C A:GLN47 3.7 22.1 1.0
CA A:GLY45 3.8 23.7 1.0
O A:HOH217 3.8 47.8 1.0
C A:GLY45 3.8 26.3 1.0
CA A:GLN47 3.9 27.6 1.0
O A:GLN47 4.2 23.4 1.0
C A:ALA46 4.3 29.5 1.0
CA A:SER48 4.3 20.6 1.0
CB A:GLN47 4.3 25.5 1.0
CA A:ALA46 4.3 24.0 1.0
CB A:ALA46 4.7 31.1 1.0
O A:GLY45 4.7 29.5 1.0
O A:HOH240 4.7 41.0 1.0
N A:GLY45 4.8 25.0 1.0

Chlorine binding site 2 out of 2 in 7ocz

Go back to Chlorine Binding Sites List in 7ocz
Chlorine binding site 2 out of 2 in the Crystal Structure of the Pid-3 Rrm Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Pid-3 Rrm Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl102

b:65.5
occ:1.00
CG2 B:THR34 4.3 22.1 1.0
CB A:GLN31 4.4 15.2 1.0
O A:GLY28 4.5 20.6 1.0
N A:LEU32 4.6 22.8 1.0
CB B:PRO35 4.6 19.9 1.0
C A:GLN31 4.7 20.5 1.0
CA A:LEU32 4.7 22.4 1.0
CA B:PRO35 4.8 19.0 1.0
OE1 A:GLN31 4.8 26.0 1.0
O A:GLN31 4.9 19.2 1.0
CD2 A:LEU24 4.9 31.9 1.0

Reference:

S.Falk, R.F.Ketting, J.Hennig, R.Lichtenberger, C.Perez-Borrajero, K.Holleis, N.Podvalnaya. Structural Insights Into Petisco - A Complex Involved in C. Elegans Pirna Processing Genes Dev. 2021.
ISSN: ISSN 0890-9369
DOI: 10.1101/GAD.348648.121
Page generated: Sun Jul 13 04:55:12 2025

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