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Chlorine in PDB 7p2m: E.Coli GYRB24 with Inhibitor LMD43 (EBL2560)

Enzymatic activity of E.Coli GYRB24 with Inhibitor LMD43 (EBL2560)

All present enzymatic activity of E.Coli GYRB24 with Inhibitor LMD43 (EBL2560):
5.6.2.2;

Protein crystallography data

The structure of E.Coli GYRB24 with Inhibitor LMD43 (EBL2560), PDB code: 7p2m was solved by C.E.M.Stevenson, D.M.Lawson, A.M.Maxwell, S.R.Henderson, D.Kikelj, M.Durcik, A.Zega, N.Zidar, J.Ilas, T.Tomasic, L.P.Masic, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.81 / 1.16
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 76.647, 50.33, 52.697, 90, 102.25, 90
R / Rfree (%) 13.4 / 16.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the E.Coli GYRB24 with Inhibitor LMD43 (EBL2560) (pdb code 7p2m). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the E.Coli GYRB24 with Inhibitor LMD43 (EBL2560), PDB code: 7p2m:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7p2m

Go back to Chlorine Binding Sites List in 7p2m
Chlorine binding site 1 out of 2 in the E.Coli GYRB24 with Inhibitor LMD43 (EBL2560)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of E.Coli GYRB24 with Inhibitor LMD43 (EBL2560) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:14.0
occ:1.00
CL1 A:N1N302 0.0 14.0 1.0
C9 A:N1N302 1.7 11.4 1.0
C10 A:N1N302 2.8 11.1 1.0
C8 A:N1N302 2.8 11.1 1.0
N1 A:N1N302 3.2 12.4 1.0
CL A:N1N302 3.4 12.6 1.0
C7 A:N1N302 3.5 12.6 1.0
O A:HOH519 3.6 31.3 1.0
CD1 A:ILE78 3.6 12.6 1.0
OD1 A:ASN46 3.7 21.8 1.0
N2 A:N1N302 3.9 11.5 1.0
C11 A:N1N302 3.9 10.8 1.0
CB A:ASN46 3.9 14.1 1.0
CG A:ASN46 3.9 16.7 1.0
CG1 A:ILE78 3.9 12.4 1.0
CG1 A:VAL120 4.3 16.6 1.0
C6 A:N1N302 4.3 12.7 1.0
CG2 A:ILE94 4.4 17.5 1.0
O A:HOH483 4.5 25.5 1.0
O A:HOH508 4.5 35.6 1.0
N A:N1N302 4.7 14.2 1.0
O A:N1N302 4.7 14.9 1.0
ND2 A:ASN46 4.8 17.4 1.0
CB A:VAL120 4.9 16.4 1.0

Chlorine binding site 2 out of 2 in 7p2m

Go back to Chlorine Binding Sites List in 7p2m
Chlorine binding site 2 out of 2 in the E.Coli GYRB24 with Inhibitor LMD43 (EBL2560)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of E.Coli GYRB24 with Inhibitor LMD43 (EBL2560) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:12.6
occ:1.00
CL A:N1N302 0.0 12.6 1.0
C10 A:N1N302 1.7 11.1 1.0
C11 A:N1N302 2.8 10.8 1.0
C9 A:N1N302 2.8 11.4 1.0
C12 A:N1N302 3.4 12.0 1.0
CL1 A:N1N302 3.4 14.0 1.0
CG2 A:VAL120 3.6 17.2 1.0
CB A:ASN46 3.7 14.1 1.0
N2 A:N1N302 3.9 11.5 1.0
C8 A:N1N302 3.9 11.1 1.0
CG2 A:VAL167 3.9 10.6 1.0
CG1 A:VAL43 3.9 11.2 1.0
CB A:VAL120 4.0 16.4 1.0
CG A:ASN46 4.1 16.7 1.0
ND2 A:ASN46 4.2 17.4 1.0
O A:VAL43 4.2 11.5 1.0
CG1 A:VAL120 4.4 16.6 1.0
CA A:VAL43 4.5 11.0 1.0
CB A:VAL167 4.7 9.1 1.0
CB A:VAL43 4.7 10.8 1.0
OD1 A:ASN46 4.8 21.8 1.0
C A:VAL43 4.9 11.3 1.0
CG2 A:THR165 5.0 10.5 1.0
CD1 A:ILE78 5.0 12.6 1.0

Reference:

C.E.M.Stevenson, D.M.Lawson, A.M.Maxwell, S.R.Henderson, D.Kikelj, M.Durcik, A.Zega, N.Zidar, J.Ilas, T.Tomasic, L.P.Masic. E.Coli GYRB24 with Inhibitor LMD43 (EBL2560) To Be Published.
Page generated: Sun Jul 13 05:32:13 2025

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