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Chlorine in PDB 7ps3: Crystal Structure of Antibody Beta-32 Fab

Protein crystallography data

The structure of Crystal Structure of Antibody Beta-32 Fab, PDB code: 7ps3 was solved by D.Zhou, J.Ren, D.I.Stuart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.50 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.583, 66.848, 135.015, 90, 90, 90
R / Rfree (%) 16.8 / 18.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Antibody Beta-32 Fab (pdb code 7ps3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Antibody Beta-32 Fab, PDB code: 7ps3:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7ps3

Go back to Chlorine Binding Sites List in 7ps3
Chlorine binding site 1 out of 3 in the Crystal Structure of Antibody Beta-32 Fab


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Antibody Beta-32 Fab within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl405

b:75.9
occ:1.00
N H:THR205 3.1 35.6 1.0
O H:THR205 3.4 40.3 1.0
OE1 H:GLN204 3.4 30.5 1.0
CA H:GLN204 3.6 33.8 1.0
CB H:GLN204 3.7 32.6 1.0
C H:GLN204 3.8 37.8 1.0
CA H:THR205 4.0 38.4 1.0
O H:HOH550 4.1 36.5 1.0
C H:THR205 4.1 34.6 1.0
CD H:GLN204 4.2 33.7 1.0
CB H:THR205 4.3 47.5 1.0
CG H:GLN204 4.5 32.1 1.0
O H:HOH626 4.6 41.4 1.0
ND2 H:ASN167 4.6 35.5 1.0
OG1 H:THR205 4.9 41.0 1.0
N H:GLN204 5.0 29.4 1.0

Chlorine binding site 2 out of 3 in 7ps3

Go back to Chlorine Binding Sites List in 7ps3
Chlorine binding site 2 out of 3 in the Crystal Structure of Antibody Beta-32 Fab


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Antibody Beta-32 Fab within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl301

b:73.4
occ:1.00
O L:HOH519 2.0 54.5 1.0
N L:ASP122 2.9 44.2 1.0
CB L:ASP122 3.5 49.8 1.0
CA L:SER121 3.7 39.2 1.0
OD2 L:ASP122 3.7 76.3 1.0
CB L:SER121 3.7 38.9 1.0
CA L:ASP122 3.7 45.8 1.0
C L:SER121 3.8 48.2 1.0
CG L:ASP122 3.8 66.8 1.0
CE H:LYS226 3.9 95.2 1.0
N L:GLU123 4.2 43.6 1.0
O H:HOH620 4.5 50.3 1.0
C L:ASP122 4.5 44.2 1.0
NZ H:LYS226 4.6 90.9 1.0
OD1 L:ASP122 4.7 66.1 1.0
CG H:PRO135 4.7 35.6 1.0
CD H:LYS226 4.7 88.0 1.0
O L:HOH405 4.7 52.6 1.0
OG L:SER121 4.8 38.3 1.0
O H:HOH533 4.8 47.0 1.0
CG H:LYS226 4.8 89.3 1.0
O L:SER121 4.9 41.2 1.0

Chlorine binding site 3 out of 3 in 7ps3

Go back to Chlorine Binding Sites List in 7ps3
Chlorine binding site 3 out of 3 in the Crystal Structure of Antibody Beta-32 Fab


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Antibody Beta-32 Fab within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl302

b:75.4
occ:1.00
N L:GLY28 3.2 50.9 1.0
CA L:GLN27 3.8 54.2 1.0
CB L:GLN27 3.9 52.4 1.0
C L:GLN27 4.0 49.0 1.0
CA L:GLY28 4.1 48.6 1.0

Reference:

C.Liu, D.Zhou, R.Nutalai, H.M.Duyvesteyn, A.Tuekprakhon, H.M.Ginn, W.Dejnirattisai, P.Supasa, A.J.Mentzer, B.Wang, J.B.Case, Y.Zhao, D.T.Skelly, R.E.Chen, S.A.Johnson, T.G.Ritter, C.Mason, T.Malik, N.Temperton, N.G.Paterson, M.A.Williams, D.R.Hall, D.K.Clare, A.Howe, P.J.Goulder, E.E.Fry, M.S.Diamond, J.Mongkolsapaya, J.Ren, D.I.Stuart, G.R.Screaton. The Antibody Response to Sars-Cov-2 Beta Underscores the Antigenic Distance to Other Variants Cell Host Microbe 2021.
ISSN: ESSN 1934-6069
DOI: 10.1016/J.CHOM.2021.11.013
Page generated: Sun Jul 13 05:52:44 2025

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