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Chlorine in PDB 7q78: Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary

Enzymatic activity of Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary

All present enzymatic activity of Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary:
4.6.1.18;

Protein crystallography data

The structure of Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 7q78 was solved by J.Lieske, S.Guenther, S.Saouane, A.Meents, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.83 / 1.52
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 64.28, 64.28, 65.02, 90, 90, 120
R / Rfree (%) 15.3 / 18.3

Other elements in 7q78:

The structure of Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary (pdb code 7q78). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 7q78:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7q78

Go back to Chlorine Binding Sites List in 7q78
Chlorine binding site 1 out of 3 in the Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:39.4
occ:1.00
HZ2 A:LYS61 2.2 30.1 1.0
NZ A:LYS61 3.1 25.1 1.0
O A:HOH304 3.2 35.3 1.0
HZ1 A:LYS61 3.3 30.1 1.0
O A:HOH361 3.4 29.7 1.0
HD2 A:LYS61 3.4 24.6 1.0
HE3 A:LYS61 3.5 31.0 1.0
HZ3 A:LYS61 3.6 30.1 1.0
CE A:LYS61 3.7 25.8 1.0
CD A:LYS61 4.0 20.5 1.0
HD3 A:LYS61 4.4 24.6 1.0
O A:HOH362 4.5 33.0 1.0
HE2 A:LYS61 4.6 31.0 1.0
H A:ASN62 4.9 22.4 1.0

Chlorine binding site 2 out of 3 in 7q78

Go back to Chlorine Binding Sites List in 7q78
Chlorine binding site 2 out of 3 in the Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:27.1
occ:1.00
HD22 A:ASN34 2.3 43.1 1.0
HD2 A:ARG10 3.0 22.4 1.0
ND2 A:ASN34 3.1 35.9 1.0
HD3 A:ARG10 3.2 22.4 1.0
HB2 A:ASN34 3.3 34.6 1.0
CD A:ARG10 3.5 18.6 1.0
HD21 A:ASN34 3.6 43.1 1.0
NE A:ARG10 3.8 17.8 1.0
CB A:ASN34 4.0 28.9 1.0
CG A:ASN34 4.0 32.9 1.0
HB3 A:ASN34 4.1 34.6 1.0
HE A:ARG10 4.2 21.4 1.0
HH11 A:ARG10 4.2 28.8 1.0
CZ A:ARG10 4.3 23.4 1.0
NH1 A:ARG10 4.4 24.0 1.0
O A:ARG33 4.7 23.1 1.0
CG A:ARG10 4.9 17.8 1.0

Chlorine binding site 3 out of 3 in 7q78

Go back to Chlorine Binding Sites List in 7q78
Chlorine binding site 3 out of 3 in the Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Room Temperature Structure of Rnase A at 72 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:27.9
occ:1.00
H A:THR45 2.6 16.5 1.0
HE1 A:HIS12 2.7 20.7 1.0
HA A:ASN44 2.8 18.0 1.0
N A:THR45 3.3 13.7 1.0
HB3 A:PHE120 3.3 24.4 1.0
HD1 A:PHE120 3.4 34.1 1.0
CE1 A:HIS12 3.5 17.3 1.0
HB A:THR45 3.5 19.7 1.0
OG1 A:THR45 3.6 21.1 1.0
CA A:ASN44 3.7 15.0 1.0
CD1 A:PHE120 3.9 28.4 1.0
C A:ASN44 3.9 18.6 1.0
HG12 A:VAL43 3.9 27.0 0.8
CB A:THR45 4.0 16.5 1.0
HD1 A:HIS12 4.1 19.3 1.0
HZ2 A:LYS41 4.1 58.5 1.0
ND1 A:HIS12 4.1 16.1 1.0
CB A:PHE120 4.2 20.3 1.0
OD1 A:ASN44 4.2 23.5 1.0
CA A:THR45 4.2 13.0 1.0
HZ3 A:LYS41 4.2 58.5 1.0
HG1 A:THR45 4.3 25.4 1.0
CG A:PHE120 4.3 21.6 1.0
O A:VAL43 4.4 19.1 1.0
N A:ASN44 4.4 15.6 1.0
NE2 A:HIS12 4.4 17.4 1.0
HG23 A:VAL43 4.5 22.9 0.2
O4 A:SO4201 4.5 61.3 0.8
O A:PHE120 4.6 23.1 1.0
HE2 A:HIS12 4.6 20.9 1.0
HB2 A:PHE120 4.6 24.4 1.0
NZ A:LYS41 4.6 48.8 1.0
C A:VAL43 4.6 18.0 1.0
CE1 A:PHE120 4.7 28.3 1.0
CG A:ASN44 4.7 21.3 1.0
CB A:ASN44 4.8 15.8 1.0
HE1 A:PHE120 4.8 34.0 1.0
O A:THR45 4.8 17.1 1.0
O1 A:SO4201 4.8 57.2 0.8
CG1 A:VAL43 4.9 22.5 0.8
HZ1 A:LYS41 4.9 58.5 1.0
HA A:THR45 4.9 15.6 1.0
H A:ASN44 5.0 18.7 1.0

Reference:

J.Lieske, S.Saouane, S.Guenther, J.Meyer, T.Pakendorf, B.Reime, A.Burkhardt, E.Crosas, J.Hakanpaeae, K.Stachnik, J.Sieg, M.Rarey, M.H.Abdellatif, A.G.Gabdulkhakov, G.K.Selikhanov, H.N.Chapman, A.Meents. Fixed-Target High-Pressure Macromolecular Crystallography To Be Published.
Page generated: Sun Jul 13 06:13:39 2025

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