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Chlorine in PDB 7rv0: Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-8446

Protein crystallography data

The structure of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-8446, PDB code: 7rv0 was solved by D.A.Kuntz, G.G.Prive, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.54 / 1.45
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 30.768, 72.771, 55.706, 90, 107.49, 90
R / Rfree (%) 15.8 / 17

Other elements in 7rv0:

The structure of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-8446 also contains other interesting chemical elements:

Fluorine (F) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-8446 (pdb code 7rv0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-8446, PDB code: 7rv0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7rv0

Go back to Chlorine Binding Sites List in 7rv0
Chlorine binding site 1 out of 2 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-8446


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-8446 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:18.9
occ:0.84
CL29 A:7RL201 0.0 18.9 0.8
C28 A:7RL201 1.7 18.6 0.8
H221 A:7RL201 2.7 20.5 0.8
C27 A:7RL201 2.7 20.2 0.8
C23 A:7RL201 2.7 18.8 0.8
HA A:ALA52 2.8 19.5 1.0
H271 A:7RL201 2.8 24.2 0.8
N22 A:7RL201 3.0 17.1 0.8
HD1 A:TYR58 3.1 24.1 1.0
HB3 A:MET51 3.2 18.5 1.0
O A:MET51 3.3 15.2 1.0
C A:MET51 3.5 13.3 1.0
CA A:ALA52 3.6 16.2 1.0
N A:ALA52 3.6 15.2 1.0
HE1 A:TYR58 3.7 27.5 1.0
CD1 A:TYR58 3.8 20.1 1.0
HB2 A:MET51 3.9 18.5 1.0
HB2 A:ALA52 3.9 19.4 1.0
N26 A:7RL201 3.9 20.5 0.8
CB A:MET51 3.9 15.4 1.0
C24 A:7RL201 4.0 21.6 0.8
H A:ALA52 4.1 18.3 1.0
CE1 A:TYR58 4.1 22.9 1.0
HE2 A:MET51 4.2 29.1 1.0
CB A:ALA52 4.3 16.1 1.0
C21 A:7RL201 4.4 18.5 0.8
CA A:MET51 4.4 13.5 1.0
C25 A:7RL201 4.4 21.2 0.8
HB1 A:ALA52 4.6 19.4 1.0
HB2 A:TYR58 4.6 20.3 1.0
C A:ALA52 4.7 16.4 1.0
H201 A:7RL201 4.7 21.6 0.8
H241 A:7RL201 4.7 26.0 0.8
HA A:MET51 4.9 16.2 1.0
CG A:TYR58 4.9 18.4 1.0
O A:THR48 5.0 15.2 1.0

Chlorine binding site 2 out of 2 in 7rv0

Go back to Chlorine Binding Sites List in 7rv0
Chlorine binding site 2 out of 2 in the Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-8446


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-8446 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:34.8
occ:1.00
H A:LEU31 2.1 19.4 1.0
N A:LEU31 3.0 16.1 1.0
HA A:ILE30 3.1 21.9 1.0
HA A:LEU31 3.2 19.4 1.0
HD23 A:LEU31 3.5 28.0 1.0
CA A:LEU31 3.7 16.2 1.0
O A:ASP29 3.8 26.9 1.0
HG A:LEU31 3.9 24.6 1.0
CA A:ILE30 4.0 18.2 1.0
C A:ILE30 4.0 15.2 1.0
HG23 A:ILE30 4.1 24.2 1.0
CD2 A:LEU31 4.3 23.3 1.0
CG A:LEU31 4.5 20.5 1.0
H A:THR32 4.5 19.3 1.0
HD21 A:LEU31 4.6 28.0 1.0
CB A:LEU31 4.7 18.0 1.0
C A:ASP29 4.7 22.9 1.0
C A:LEU31 4.8 16.7 1.0
CG2 A:ILE30 4.8 20.1 1.0
HG12 A:ILE30 4.8 23.8 1.0
HG22 A:ILE30 4.8 24.2 1.0
N A:ILE30 4.9 19.1 1.0
N A:THR32 4.9 16.1 1.0
CB A:ILE30 4.9 17.6 1.0

Reference:

I.Watson, M.Isaac. Crystal Structure of the BCL6 Btb Domain in Complex with Oicr-8446 To Be Published.
Page generated: Sun Jul 13 06:50:17 2025

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